Variant report

Variant	rs35366909
Chromosome Location	chr11:57065586-57065587
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:57065389..57068146-chr11:57093354..57095696,2	MCF-7	breast:

Extended variants
information (count: 109 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:108)

rs_ID	r²[population]
rs1124846	1.00[AFR][1000 genomes]
rs12417609	1.00[AFR][1000 genomes]
rs12417875	1.00[AFR][1000 genomes]
rs12574780	0.86[AMR][1000 genomes]
rs12576471	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs12785770	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs12786396	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs12787728	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12788046	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs12789789	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs12792413	1.00[AFR][1000 genomes]
rs12797375	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12798121	1.00[AFR][1000 genomes]
rs12799582	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12800182	1.00[AFR][1000 genomes]
rs12800196	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs12800402	1.00[AFR][1000 genomes]
rs12801000	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12802096	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12803405	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs12804022	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12806656	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12806978	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs12807593	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12808193	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12808495	1.00[AFR][1000 genomes]
rs12808784	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12808788	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12808989	0.97[EUR][1000 genomes]
rs17145552	1.00[AFR][1000 genomes]
rs17145556	1.00[AFR][1000 genomes]
rs17151596	1.00[AFR][1000 genomes]
rs17151610	1.00[AFR][1000 genomes]
rs17151664	1.00[AFR][1000 genomes]
rs17151671	1.00[AFR][1000 genomes]
rs17151841	1.00[AFR][1000 genomes]
rs17564188	1.00[AFR][1000 genomes]
rs17651297	1.00[AFR][1000 genomes]
rs17651573	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs1806823	1.00[AFR][1000 genomes]
rs1939488	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1941034	1.00[AFR][1000 genomes]
rs1941054	1.00[AFR][1000 genomes]
rs1943485	1.00[AFR][1000 genomes]
rs2077188	1.00[AFR][1000 genomes]
rs2156457	1.00[AFR][1000 genomes]
rs2156458	1.00[AFR][1000 genomes]
rs2156460	1.00[AFR][1000 genomes]
rs2212608	1.00[AFR][1000 genomes]
rs2511025	0.87[AMR][1000 genomes]
rs2846046	0.87[AMR][1000 genomes]
rs2851723	0.87[AMR][1000 genomes]
rs34014874	1.00[AFR][1000 genomes]
rs34069781	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34076116	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34085089	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34177110	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34458685	1.00[AFR][1000 genomes]
rs34498883	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34505638	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34544917	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs34572680	1.00[AFR][1000 genomes]
rs34704777	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs34742309	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs34754262	1.00[AFR][1000 genomes]
rs34761603	1.00[AFR][1000 genomes]
rs34769912	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs34850337	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34905018	1.00[AFR][1000 genomes]
rs34985061	1.00[AFR][1000 genomes]
rs35272228	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35284031	1.00[AFR][1000 genomes]
rs35388927	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35536636	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs35566323	1.00[AFR][1000 genomes]
rs35707583	1.00[AFR][1000 genomes]
rs35721601	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35818468	1.00[AFR][1000 genomes]
rs35845551	1.00[AFR][1000 genomes]
rs35943801	1.00[AFR][1000 genomes]
rs35950335	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35980006	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35991636	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36090449	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6591419	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71484414	1.00[AFR][1000 genomes]
rs71484419	1.00[AFR][1000 genomes]
rs71484422	1.00[AFR][1000 genomes]
rs71484424	1.00[AFR][1000 genomes]
rs71484425	1.00[AFR][1000 genomes]
rs71484428	1.00[AFR][1000 genomes]
rs71484429	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs71484430	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs71484431	1.00[AFR][1000 genomes]
rs71484432	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs71484433	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs71484434	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs71484435	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs71484436	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs71484437	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs71484440	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71484441	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71484444	1.00[AFR][1000 genomes]
rs71484445	1.00[AFR][1000 genomes]
rs71484446	1.00[AFR][1000 genomes]
rs717117	1.00[AFR][1000 genomes]
rs746885	1.00[AFR][1000 genomes]
rs948843	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915640	chr11:56814841-57139786	Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:57052400-57078200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr11:57057000-57066400	Weak transcription	Colonic Mucosa	Colon
3	chr11:57057000-57066800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:57057200-57066400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr11:57057200-57066800	Weak transcription	Brain Substantia Nigra	brain
6	chr11:57057400-57065800	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr11:57057400-57066600	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr11:57057800-57065600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr11:57057800-57066400	Weak transcription	Fetal Kidney	kidney
10	chr11:57058200-57066600	Weak transcription	HUVEC	blood vessel
11	chr11:57060800-57066600	Weak transcription	K562	blood
12	chr11:57061000-57066600	Weak transcription	Fetal Thymus	thymus
13	chr11:57061200-57066400	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr11:57061200-57066800	Weak transcription	HepG2	liver
15	chr11:57062200-57066400	Weak transcription	Psoas Muscle	Psoas
16	chr11:57062200-57066600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr11:57062400-57066600	Weak transcription	Fetal Brain Male	brain
18	chr11:57062600-57065800	Weak transcription	Brain Angular Gyrus	brain
19	chr11:57062600-57066000	Weak transcription	Brain Cingulate Gyrus	brain
20	chr11:57062600-57066000	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr11:57062600-57066200	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr11:57062600-57066400	Weak transcription	Rectal Mucosa Donor 29	rectum
23	chr11:57062600-57066400	Weak transcription	Small Intestine	intestine
24	chr11:57062800-57065600	Weak transcription	NH-A	brain
25	chr11:57062800-57066200	Weak transcription	Duodenum Mucosa	Duodenum
26	chr11:57062800-57066400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr11:57062800-57066800	Weak transcription	Stomach Mucosa	stomach
28	chr11:57063000-57066800	Strong transcription	Fetal Muscle Trunk	muscle
29	chr11:57063200-57066600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr11:57063400-57065600	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr11:57063400-57066600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr11:57063400-57066600	Weak transcription	Esophagus	oesophagus
33	chr11:57063400-57066600	Weak transcription	Hela-S3	cervix
34	chr11:57063600-57070400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr11:57063600-57070800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr11:57063600-57071200	Strong transcription	HSMM	muscle
37	chr11:57063800-57068600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr11:57064000-57066600	Strong transcription	A549	lung
39	chr11:57064000-57066800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
40	chr11:57064000-57068200	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
41	chr11:57064000-57071400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr11:57064200-57066600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr11:57064200-57066600	Strong transcription	Liver	Liver
44	chr11:57064200-57067200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr11:57064200-57071600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr11:57064200-57071600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr11:57064400-57066600	Strong transcription	HUES6 Cell Line	embryonic stem cell
48	chr11:57064400-57066600	Strong transcription	Adipose Nuclei	Adipose
49	chr11:57064400-57066800	Strong transcription	HUES64 Cell Line	embryonic stem cell
50	chr11:57064400-57066800	Strong transcription	NHDF-Ad	bronchial

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