Variant report

Variant	rs2846046
Chromosome Location	chr11:57036571-57036572
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 81 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs12574780	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12576471	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12785770	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12787728	0.93[AMR][1000 genomes]
rs12788046	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12789789	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12797375	0.93[AMR][1000 genomes]
rs12798121	0.81[EUR][1000 genomes]
rs12799582	0.93[AMR][1000 genomes]
rs12800196	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12801000	0.93[AMR][1000 genomes]
rs12802096	0.93[AMR][1000 genomes]
rs12803405	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12804022	0.93[AMR][1000 genomes]
rs12806656	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12806978	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12807593	0.93[AMR][1000 genomes]
rs12808193	0.93[AMR][1000 genomes]
rs12808784	0.93[AMR][1000 genomes]
rs12808788	0.86[AMR][1000 genomes]
rs17151841	0.81[EUR][1000 genomes]
rs17651573	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2508769	0.87[AFR][1000 genomes]
rs2508771	0.91[AFR][1000 genomes]
rs2511025	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2846040	0.91[AFR][1000 genomes]
rs2846043	0.87[AFR][1000 genomes]
rs2846045	0.83[AFR][1000 genomes]
rs2846047	0.91[AFR][1000 genomes]
rs2846048	0.91[AFR][1000 genomes]
rs2851723	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2851724	0.91[AFR][1000 genomes]
rs34014874	0.81[EUR][1000 genomes]
rs34069781	0.93[AMR][1000 genomes]
rs34076116	0.93[AMR][1000 genomes]
rs34085089	0.93[AMR][1000 genomes]
rs34177110	0.93[AMR][1000 genomes]
rs34498883	0.93[AMR][1000 genomes]
rs34505638	0.93[AMR][1000 genomes]
rs34544917	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34704777	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34742309	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34754262	0.81[EUR][1000 genomes]
rs34769912	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34850337	0.93[AMR][1000 genomes]
rs35272228	0.93[AMR][1000 genomes]
rs35284031	0.81[EUR][1000 genomes]
rs35366909	0.87[AMR][1000 genomes]
rs35388927	0.93[AMR][1000 genomes]
rs35407832	0.81[EUR][1000 genomes]
rs35536636	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35707583	0.81[EUR][1000 genomes]
rs35721601	0.93[AMR][1000 genomes]
rs35818468	0.81[EUR][1000 genomes]
rs35950335	0.93[AMR][1000 genomes]
rs35980006	0.93[AMR][1000 genomes]
rs35991636	0.93[AMR][1000 genomes]
rs36090449	0.93[AMR][1000 genomes]
rs499885	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs546403	0.91[AFR][1000 genomes]
rs558266	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs559168	0.87[AFR][1000 genomes]
rs578831	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs639248	0.91[AFR][1000 genomes]
rs652353	0.87[AFR][1000 genomes]
rs655402	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs656366	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs670919	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71484428	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71484429	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71484430	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71484432	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71484433	0.93[AMR][1000 genomes]
rs71484434	0.93[AMR][1000 genomes]
rs71484435	0.93[AMR][1000 genomes]
rs71484436	0.93[AMR][1000 genomes]
rs71484437	0.93[AMR][1000 genomes]
rs71484440	0.93[AMR][1000 genomes]
rs71484441	0.93[AMR][1000 genomes]
rs71484444	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915640	chr11:56814841-57139786	Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:57030600-57036800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr11:57031000-57037200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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