Variant report

Variant	rs34085089
Chromosome Location	chr11:57066172-57066173
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:57065389..57068146-chr11:57093354..57095696,2	MCF-7	breast:

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs12574780	0.93[AMR][1000 genomes]
rs12576471	0.93[AMR][1000 genomes]
rs12785770	1.00[AMR][1000 genomes]
rs12786396	0.94[EUR][1000 genomes]
rs12787728	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12788046	1.00[AMR][1000 genomes]
rs12789789	0.93[AMR][1000 genomes]
rs12797375	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12798121	0.85[AMR][1000 genomes]
rs12799582	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12800182	0.85[AMR][1000 genomes]
rs12800196	1.00[AMR][1000 genomes]
rs12801000	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12802096	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12803405	1.00[AMR][1000 genomes]
rs12804022	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12806656	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12806978	1.00[AMR][1000 genomes]
rs12807593	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12808193	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12808784	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12808788	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12808989	1.00[EUR][1000 genomes]
rs17151841	0.85[AMR][1000 genomes]
rs17651573	0.93[AMR][1000 genomes]
rs1939488	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2230648	0.85[AMR][1000 genomes]
rs2511025	0.93[AMR][1000 genomes]
rs2846046	0.93[AMR][1000 genomes]
rs2851723	0.93[AMR][1000 genomes]
rs34014874	0.85[AMR][1000 genomes]
rs34069781	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34076116	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34177110	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34498883	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34505638	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34544917	1.00[AMR][1000 genomes]
rs34572680	0.85[AMR][1000 genomes]
rs34704777	1.00[AMR][1000 genomes]
rs34742309	0.93[AMR][1000 genomes]
rs34754262	0.85[AMR][1000 genomes]
rs34769912	1.00[AMR][1000 genomes]
rs34850337	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35272228	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35284031	0.85[AMR][1000 genomes]
rs35366909	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35388927	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35407832	0.85[AMR][1000 genomes]
rs35536636	0.93[AMR][1000 genomes]
rs35707583	0.85[AMR][1000 genomes]
rs35721601	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35818468	0.85[AMR][1000 genomes]
rs35943801	0.85[AMR][1000 genomes]
rs35950335	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35980006	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35991636	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36090449	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs499885	0.86[AMR][1000 genomes]
rs558266	0.86[AMR][1000 genomes]
rs578831	0.86[AMR][1000 genomes]
rs655402	0.86[AMR][1000 genomes]
rs656366	0.86[AMR][1000 genomes]
rs6591419	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs670919	0.86[AMR][1000 genomes]
rs71484429	0.93[AMR][1000 genomes]
rs71484430	0.93[AMR][1000 genomes]
rs71484432	1.00[AMR][1000 genomes]
rs71484433	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71484434	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71484435	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71484436	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71484437	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs71484440	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71484441	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71484443	0.81[EUR][1000 genomes]
rs71484444	0.85[AMR][1000 genomes]
rs71484445	0.85[AMR][1000 genomes]
rs71484446	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915640	chr11:56814841-57139786	Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:57052400-57078200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr11:57057000-57066400	Weak transcription	Colonic Mucosa	Colon
3	chr11:57057000-57066800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:57057200-57066400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr11:57057200-57066800	Weak transcription	Brain Substantia Nigra	brain
6	chr11:57057400-57066600	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr11:57057800-57066400	Weak transcription	Fetal Kidney	kidney
8	chr11:57058200-57066600	Weak transcription	HUVEC	blood vessel
9	chr11:57060800-57066600	Weak transcription	K562	blood
10	chr11:57061000-57066600	Weak transcription	Fetal Thymus	thymus
11	chr11:57061200-57066400	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr11:57061200-57066800	Weak transcription	HepG2	liver
13	chr11:57062200-57066400	Weak transcription	Psoas Muscle	Psoas
14	chr11:57062200-57066600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr11:57062400-57066600	Weak transcription	Fetal Brain Male	brain
16	chr11:57062600-57066200	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr11:57062600-57066400	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr11:57062600-57066400	Weak transcription	Small Intestine	intestine
19	chr11:57062800-57066200	Weak transcription	Duodenum Mucosa	Duodenum
20	chr11:57062800-57066400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr11:57062800-57066800	Weak transcription	Stomach Mucosa	stomach
22	chr11:57063000-57066800	Strong transcription	Fetal Muscle Trunk	muscle
23	chr11:57063200-57066600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr11:57063400-57066600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr11:57063400-57066600	Weak transcription	Esophagus	oesophagus
26	chr11:57063400-57066600	Weak transcription	Hela-S3	cervix
27	chr11:57063600-57070400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr11:57063600-57070800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr11:57063600-57071200	Strong transcription	HSMM	muscle
30	chr11:57063800-57068600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr11:57064000-57066600	Strong transcription	A549	lung
32	chr11:57064000-57066800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
33	chr11:57064000-57068200	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
34	chr11:57064000-57071400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr11:57064200-57066600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr11:57064200-57066600	Strong transcription	Liver	Liver
37	chr11:57064200-57067200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr11:57064200-57071600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr11:57064200-57071600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr11:57064400-57066600	Strong transcription	HUES6 Cell Line	embryonic stem cell
41	chr11:57064400-57066600	Strong transcription	Adipose Nuclei	Adipose
42	chr11:57064400-57066800	Strong transcription	HUES64 Cell Line	embryonic stem cell
43	chr11:57064400-57066800	Strong transcription	NHDF-Ad	bronchial
44	chr11:57064600-57066800	Weak transcription	Primary T cells fromperipheralblood	blood
45	chr11:57064800-57066600	Strong transcription	Skeletal Muscle Male	skeletal muscle
46	chr11:57064800-57068400	ZNF genes & repeats	Spleen	Spleen
47	chr11:57064800-57071200	ZNF genes & repeats	Fetal Stomach	stomach
48	chr11:57064800-57071200	Strong transcription	Placenta Amnion	Placenta Amnion
49	chr11:57064800-57071600	Strong transcription	Osteobl	bone
50	chr11:57064800-57072000	Strong transcription	Cortex derived primary cultured neurospheres	brain

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