Variant report

Variant	rs61739878
Chromosome Location	chr11:56678655-56678656
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12421860	0.94[AFR][1000 genomes]
rs12575387	0.94[AFR][1000 genomes]
rs12576168	0.84[AFR][1000 genomes]
rs17151369	0.84[AFR][1000 genomes]
rs17151375	0.84[AFR][1000 genomes]
rs1938752	1.00[AMR][1000 genomes]
rs1938755	0.94[AFR][1000 genomes]
rs1938758	0.94[AFR][1000 genomes]
rs2008410	0.84[AFR][1000 genomes]
rs3017309	1.00[AMR][1000 genomes]
rs35131429	0.84[AFR][1000 genomes]
rs35621347	0.84[AFR][1000 genomes]
rs61738766	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv468577	chr11:56503728-56704042	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
2	nsv555101	chr11:56503728-56704042	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases
3	nsv469960	chr11:56605222-56704042	Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1045889	chr11:56624365-56737435	Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv520375	chr11:56669830-56704042	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:56676600-56679200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr11:56676600-56679200	Enhancers	HMEC	breast
3	chr11:56677200-56679200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr11:56677600-56679200	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr11:56677600-56683400	Weak transcription	Fetal Lung	lung
6	chr11:56677800-56679000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr11:56677800-56679000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr11:56678200-56678800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr11:56678200-56679000	Flanking Active TSS	NHEK	skin
10	chr11:56678200-56679400	Flanking Active TSS	A549	lung
11	chr11:56678400-56679200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr11:56678600-56678800	Enhancers	Rectal Mucosa Donor 29	rectum
13	chr11:56678600-56678800	Enhancers	NH-A	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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