The 2.0 version of rSNPBase

Variant report

Variant rs17643171
Chromosome Location chr3:158433341-158433342
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:113 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:158390800-158444200 Weak transcription Gastric stomach
2 chr3:158390800-158445400 Weak transcription H1 Cell Line embryonic stem cell
3 chr3:158391000-158438800 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
4 chr3:158397000-158443400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
5 chr3:158397000-158448000 Weak transcription Thymus Thymus
6 chr3:158399600-158445400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
7 chr3:158403600-158438600 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
8 chr3:158408400-158443000 Weak transcription HepG2 liver
9 chr3:158409800-158439000 Weak transcription Primary T killer memory cells from peripheral blood blood
10 chr3:158411600-158439400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
11 chr3:158412200-158440800 Weak transcription Rectal Smooth Muscle rectum
12 chr3:158412400-158439200 Weak transcription Fetal Kidney kidney
13 chr3:158415000-158440800 Weak transcription Colonic Mucosa Colon
14 chr3:158417600-158440600 Weak transcription Aorta Aorta
15 chr3:158421800-158435600 Strong transcription Fetal Intestine Small intestine
16 chr3:158423800-158438800 Weak transcription Primary T helper cells PMA-I stimulated --
17 chr3:158424200-158446000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
18 chr3:158426400-158435200 Weak transcription Fetal Brain Male brain
19 chr3:158426600-158436600 Strong transcription Fetal Stomach stomach
20 chr3:158427200-158435600 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
21 chr3:158427600-158439000 Weak transcription Primary T helper 17 cells PMA-I stimulated --
22 chr3:158427600-158440600 Weak transcription Primary Natural Killer cells fromperipheralblood blood
23 chr3:158427800-158440400 Weak transcription Primary monocytes fromperipheralblood blood
24 chr3:158427800-158440600 Weak transcription Duodenum Mucosa Duodenum
25 chr3:158427800-158440800 Weak transcription Liver Liver
26 chr3:158427800-158440800 Weak transcription Esophagus oesophagus
27 chr3:158428000-158434800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
28 chr3:158428000-158438800 Weak transcription Fetal Brain Female brain
29 chr3:158428600-158438800 Weak transcription Primary T helper naive cells from peripheral blood blood
30 chr3:158429000-158440600 Weak transcription Primary B cells from peripheral blood blood
31 chr3:158429200-158433600 Weak transcription Placenta Placenta
32 chr3:158429200-158438200 Weak transcription Primary T helper naive cells fromperipheralblood blood
33 chr3:158429400-158436200 Weak transcription Skeletal Muscle Female skeletal muscle
34 chr3:158429400-158438200 Weak transcription Primary T helper cells fromperipheralblood blood
35 chr3:158429600-158449000 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
36 chr3:158429800-158440800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
37 chr3:158430000-158434800 Weak transcription Psoas Muscle Psoas
38 chr3:158430200-158434800 Weak transcription Colon Smooth Muscle Colon
39 chr3:158430600-158434000 Strong transcription Stomach Smooth Muscle stomach
40 chr3:158430600-158435400 Weak transcription Skeletal Muscle Male skeletal muscle
41 chr3:158430600-158440800 Weak transcription Small Intestine intestine
42 chr3:158430800-158433400 Weak transcription NHEK skin
43 chr3:158431000-158434600 Weak transcription HSMMtube muscle
44 chr3:158431000-158436200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
45 chr3:158431000-158438800 Weak transcription Primary T cells fromperipheralblood blood
46 chr3:158431000-158439600 Weak transcription H9 Cell Line embryonic stem cell
47 chr3:158431000-158439800 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
48 chr3:158431000-158440600 Weak transcription Fetal Thymus thymus
49 chr3:158431000-158442000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
50 chr3:158431000-158442400 Weak transcription Duodenum Smooth Muscle Duodenum

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Last update: Aug 31, 2015