Variant report

Variant	rs1764635
Chromosome Location	chr1:197242262-197242263
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1764634	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1764793	0.89[AFR][1000 genomes]
rs590864	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs603431	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs651956	0.89[AFR][1000 genomes]
rs693896	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528460	chr1:196542567-197446702	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:197237600-197243800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr1:197238600-197242800	Weak transcription	Brain Cingulate Gyrus	brain
3	chr1:197238800-197244000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr1:197239600-197242800	Weak transcription	Brain Substantia Nigra	brain
5	chr1:197239600-197244600	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr1:197240000-197242800	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr1:197240000-197243000	Weak transcription	Brain Hippocampus Middle	brain
8	chr1:197240000-197243200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr1:197240200-197253200	Weak transcription	Brain Angular Gyrus	brain
10	chr1:197240600-197242600	Weak transcription	Brain Germinal Matrix	brain
11	chr1:197241800-197242600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr1:197242000-197242600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr1:197242200-197242400	Enhancers	Brain Anterior Caudate	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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