Variant report

Variant	rs1764793
Chromosome Location	chr1:197276062-197276063
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1764634	0.89[AFR][1000 genomes]
rs1764635	0.89[AFR][1000 genomes]
rs2039639	1.00[AMR][1000 genomes]
rs58937239	1.00[AMR][1000 genomes]
rs590864	0.84[AFR][1000 genomes]
rs59310838	1.00[AMR][1000 genomes]
rs60000414	1.00[AMR][1000 genomes]
rs603431	0.91[AFR][1000 genomes]
rs651956	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs693896	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528460	chr1:196542567-197446702	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:197273400-197277000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr1:197273400-197277200	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr1:197273600-197277000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr1:197274000-197282200	Weak transcription	Fetal Heart	heart
5	chr1:197275000-197276600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
6	chr1:197275000-197276800	Enhancers	Brain Germinal Matrix	brain
7	chr1:197275800-197276400	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr1:197275800-197276600	Enhancers	Brain Substantia Nigra	brain
9	chr1:197275800-197276800	Weak transcription	Fetal Intestine Large	intestine
10	chr1:197276000-197276200	Weak transcription	Brain Cingulate Gyrus	brain
11	chr1:197276000-197276600	Enhancers	Brain Angular Gyrus	brain
12	chr1:197276000-197276600	Enhancers	Brain Anterior Caudate	brain
13	chr1:197276000-197277000	Enhancers	Brain Inferior Temporal Lobe	brain
14	chr1:197276000-197277200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr1:197276000-197277200	Enhancers	Brain Hippocampus Middle	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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