Variant report

Variant	rs603431
Chromosome Location	chr1:197256925-197256926
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1764634	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1764635	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1764793	0.91[AFR][1000 genomes]
rs590864	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs651956	0.91[AFR][1000 genomes]
rs693896	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528460	chr1:196542567-197446702	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:197251000-197257000	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr1:197253600-197257000	Weak transcription	Pancreas	Pancrea
3	chr1:197254400-197257000	Weak transcription	Brain Substantia Nigra	brain
4	chr1:197254600-197257400	Enhancers	Fetal Thymus	thymus
5	chr1:197256600-197257400	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr1:197256800-197258200	Enhancers	Brain Anterior Caudate	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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