Variant report

Variant	rs17647665
Chromosome Location	chr15:93136106-93136107
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FAM174B-1	chr15:93135802-93137482	XLOC_011585
2	lnc-FAM174B-1	chr15:93135809-93139618	ENSG00000260337.1

Extended variants
information (count: 31 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1390786	0.82[AMR][1000 genomes]
rs17647466	0.84[CEU][hapmap]
rs17647496	0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17647569	1.00[JPT][hapmap];0.82[AMR][1000 genomes]
rs17647695	0.96[GIH][hapmap];1.00[JPT][hapmap];0.85[TSI][hapmap]
rs17703970	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17704035	0.84[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.85[TSI][hapmap];0.82[AMR][1000 genomes]
rs17704052	1.00[CEU][hapmap];0.93[CHB][hapmap];0.97[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17704058	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17704159	0.94[JPT][hapmap];0.81[AMR][1000 genomes]
rs1826851	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2173062	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2289221	0.84[EUR][1000 genomes]
rs28617400	0.85[EUR][1000 genomes]
rs34838126	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4777724	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4777727	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56046081	0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56910829	0.82[AMR][1000 genomes]
rs61130781	0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7162755	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7177194	0.89[JPT][hapmap]
rs74029109	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs74029112	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs74029123	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs74029124	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948621	chr15:92688981-93158095	Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv1037972	chr15:92804908-93270761	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
3	nsv904499	chr15:92914795-93472582	Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	163 gene(s)	inside rSNPs	diseases
4	nsv948738	chr15:93070742-93728147	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	169 gene(s)	inside rSNPs	diseases
5	nsv1049490	chr15:93134405-93591660	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	151 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs17647665	NCRNA00052	cis	cerebellum	SCAN
rs17647665	ANPEP	cis	parietal	SCAN

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:93126000-93136600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr15:93127800-93138600	Weak transcription	Fetal Lung	lung
3	chr15:93128400-93152200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr15:93130000-93136200	Weak transcription	Right Ventricle	heart
5	chr15:93130600-93136600	Weak transcription	Fetal Muscle Leg	muscle
6	chr15:93131800-93136400	Weak transcription	Adipose Nuclei	Adipose
7	chr15:93132200-93139000	Weak transcription	Fetal Muscle Trunk	muscle
8	chr15:93134800-93136200	Active TSS	Left Ventricle	heart
9	chr15:93135200-93139200	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr15:93135600-93136200	Weak transcription	Right Atrium	heart
11	chr15:93136000-93136200	Weak transcription	Aorta	Aorta
12	chr15:93136000-93139800	Weak transcription	Fetal Heart	heart

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