Variant report

Variant	rs2173062
Chromosome Location	chr15:93131988-93131989
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:93112788..93115363-chr15:93129739..93132011,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000258647	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1390786	0.81[AMR][1000 genomes]
rs17647466	0.84[CEU][hapmap]
rs17647496	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17647569	1.00[JPT][hapmap];0.81[AMR][1000 genomes]
rs17647665	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17647695	1.00[JPT][hapmap]
rs17703970	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17704035	1.00[JPT][hapmap];0.81[AMR][1000 genomes]
rs17704052	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17704058	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17704159	0.90[JPT][hapmap]
rs1826851	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2173063	0.95[YRI][hapmap];0.87[AFR][1000 genomes]
rs2289221	0.83[EUR][1000 genomes]
rs28617400	0.84[EUR][1000 genomes]
rs34838126	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4453419	0.90[AFR][1000 genomes]
rs4777724	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4777727	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56046081	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56910829	0.81[AMR][1000 genomes]
rs61130781	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7162755	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7177194	0.85[JPT][hapmap]
rs74029109	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs74029112	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs74029123	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs74029124	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs74029126	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948621	chr15:92688981-93158095	Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv1037972	chr15:92804908-93270761	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
3	nsv904499	chr15:92914795-93472582	Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	163 gene(s)	inside rSNPs	diseases
4	nsv948738	chr15:93070742-93728147	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	169 gene(s)	inside rSNPs	diseases
5	nsv457249	chr15:93116519-93133425	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv570503	chr15:93116519-93133425	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:93113800-93134400	Weak transcription	Right Atrium	heart
2	chr15:93126000-93136600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr15:93127800-93138600	Weak transcription	Fetal Lung	lung
4	chr15:93128400-93152200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr15:93130000-93136200	Weak transcription	Right Ventricle	heart
6	chr15:93130600-93134400	Weak transcription	Gastric	stomach
7	chr15:93130600-93136600	Weak transcription	Fetal Muscle Leg	muscle
8	chr15:93131800-93136400	Weak transcription	Adipose Nuclei	Adipose

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