Variant report

Variant	rs17647496
Chromosome Location	chr15:93124999-93125000
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FAM174B-2	chr15:93114431-93127864	XLOC_011584

Extended variants
information (count: 34 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs17647466	0.84[CEU][hapmap]
rs17647569	0.94[JPT][hapmap]
rs17647665	0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17647695	0.85[GIH][hapmap];0.94[JPT][hapmap]
rs17703970	0.88[AFR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17704035	0.85[GIH][hapmap];0.94[JPT][hapmap]
rs17704052	1.00[CEU][hapmap];0.94[CHB][hapmap];0.90[CHD][hapmap];0.92[GIH][hapmap];0.94[JPT][hapmap];0.81[MKK][hapmap];0.87[TSI][hapmap];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17704058	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17704159	0.88[JPT][hapmap]
rs1826851	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2173062	1.00[CEU][hapmap];0.87[CHB][hapmap];0.94[JPT][hapmap];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2289221	0.86[EUR][1000 genomes]
rs28617400	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34838126	0.88[AFR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4777724	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4777727	0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56046081	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61130781	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7162755	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7164128	0.88[MEX][hapmap]
rs7177194	0.84[JPT][hapmap]
rs74029107	0.83[AFR][1000 genomes]
rs74029108	0.83[AFR][1000 genomes]
rs74029109	0.81[AFR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs74029110	0.81[AFR][1000 genomes]
rs74029112	0.99[EUR][1000 genomes]
rs74029123	0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs74029124	0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948621	chr15:92688981-93158095	Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv1037972	chr15:92804908-93270761	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
3	nsv904499	chr15:92914795-93472582	Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	163 gene(s)	inside rSNPs	diseases
4	nsv948738	chr15:93070742-93728147	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	169 gene(s)	inside rSNPs	diseases
5	nsv457249	chr15:93116519-93133425	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv570503	chr15:93116519-93133425	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs17647496	NCRNA00052	cis	cerebellum	SCAN
rs17647496	ANPEP	cis	parietal	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:93106000-93125800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr15:93113800-93134400	Weak transcription	Right Atrium	heart
3	chr15:93121600-93125600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr15:93123000-93127600	Weak transcription	Right Ventricle	heart
5	chr15:93124400-93125400	Weak transcription	Fetal Muscle Leg	muscle

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