Variant report

Variant	rs74029108
Chromosome Location	chr15:93125767-93125768
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FAM174B-2	chr15:93114431-93127864	XLOC_011584

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs16947098	0.96[EUR][1000 genomes]
rs16947102	0.96[EUR][1000 genomes]
rs17647496	0.83[AFR][1000 genomes]
rs17703970	0.86[AFR][1000 genomes]
rs2173063	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34838126	0.86[AFR][1000 genomes]
rs4453419	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56046081	0.91[AFR][1000 genomes]
rs56240024	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61130781	0.83[AFR][1000 genomes]
rs74029105	0.81[ASN][1000 genomes]
rs74029106	0.81[ASN][1000 genomes]
rs74029107	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74029110	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs74029111	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74029114	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74029119	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74029122	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74029126	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8033725	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948621	chr15:92688981-93158095	Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv1037972	chr15:92804908-93270761	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
3	nsv904499	chr15:92914795-93472582	Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	163 gene(s)	inside rSNPs	diseases
4	nsv948738	chr15:93070742-93728147	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	169 gene(s)	inside rSNPs	diseases
5	nsv457249	chr15:93116519-93133425	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv570503	chr15:93116519-93133425	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:93106000-93125800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr15:93113800-93134400	Weak transcription	Right Atrium	heart
3	chr15:93123000-93127600	Weak transcription	Right Ventricle	heart
4	chr15:93125400-93128000	Enhancers	Fetal Muscle Leg	muscle
5	chr15:93125600-93126000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr15:93125600-93126000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr15:93125600-93126000	Flanking Active TSS	HSMMtube	muscle

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