Variant report

Variant	rs16947102
Chromosome Location	chr15:93147260-93147261
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:93147223..93149686-chr15:93178777..93181726,2	MCF-7	breast:
2	chr15:93145840..93149737-chr15:93196292..93199149,3	MCF-7	breast:
3	chr15:93146697..93148727-chr15:93208767..93210664,2	MCF-7	breast:
4	chr15:93146362..93148233-chr15:93152029..93154921,2	K562	blood:

Variant related genes	Relation type
ENSG00000185442	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs12593636	1.00[ASN][1000 genomes]
rs16947098	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2173063	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2254142	1.00[ASN][1000 genomes]
rs285754	1.00[ASN][1000 genomes]
rs285755	1.00[ASN][1000 genomes]
rs285757	1.00[ASN][1000 genomes]
rs285758	1.00[ASN][1000 genomes]
rs285772	1.00[ASN][1000 genomes]
rs366789	1.00[ASN][1000 genomes]
rs426221	1.00[ASN][1000 genomes]
rs4453419	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56240024	0.94[EUR][1000 genomes]
rs7166357	0.92[AFR][1000 genomes]
rs7171297	0.92[AFR][1000 genomes]
rs72758232	1.00[ASN][1000 genomes]
rs72758234	1.00[ASN][1000 genomes]
rs72758301	1.00[ASN][1000 genomes]
rs73454725	1.00[ASN][1000 genomes]
rs73454730	1.00[ASN][1000 genomes]
rs74029107	0.95[EUR][1000 genomes]
rs74029108	0.96[EUR][1000 genomes]
rs74029110	0.98[EUR][1000 genomes]
rs74029111	0.96[EUR][1000 genomes]
rs74029114	0.98[EUR][1000 genomes]
rs74029119	0.98[EUR][1000 genomes]
rs74029122	0.98[EUR][1000 genomes]
rs74029126	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8033725	1.00[CEU][hapmap];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948621	chr15:92688981-93158095	Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv1037972	chr15:92804908-93270761	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
3	nsv904499	chr15:92914795-93472582	Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	163 gene(s)	inside rSNPs	diseases
4	nsv948738	chr15:93070742-93728147	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	169 gene(s)	inside rSNPs	diseases
5	nsv1049490	chr15:93134405-93591660	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	151 gene(s)	inside rSNPs	diseases
6	esv1808537	chr15:93146057-93191935	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:93128400-93152200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr15:93139400-93159800	Weak transcription	Fetal Lung	lung
3	chr15:93142200-93156400	Weak transcription	Lung	lung
4	chr15:93142200-93160400	Weak transcription	Right Atrium	heart
5	chr15:93142400-93152400	Weak transcription	Fetal Muscle Trunk	muscle
6	chr15:93143600-93160000	Weak transcription	Right Ventricle	heart
7	chr15:93144800-93147400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr15:93145400-93149200	Weak transcription	Left Ventricle	heart
9	chr15:93145400-93151200	Weak transcription	Gastric	stomach
10	chr15:93146600-93147600	Enhancers	Fetal Muscle Leg	muscle
11	chr15:93146800-93147400	Enhancers	Skeletal Muscle Female	skeletal muscle
12	chr15:93146800-93147400	Enhancers	HSMMtube	muscle
13	chr15:93146800-93147600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr15:93146800-93147600	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr15:93146800-93147600	Enhancers	Muscle Satellite Cultured Cells	--
16	chr15:93146800-93147600	Enhancers	HSMM	muscle
17	chr15:93146800-93160000	Weak transcription	Psoas Muscle	Psoas
18	chr15:93147000-93147600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr15:93147000-93147600	Enhancers	Skeletal Muscle Male	skeletal muscle
20	chr15:93147000-93152400	Weak transcription	Esophagus	oesophagus
21	chr15:93147200-93147600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr15:93147200-93148600	Weak transcription	Pancreas	Pancrea

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links