Variant report

Variant	rs73454725
Chromosome Location	chr15:93156957-93156958
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:93156412..93156959-chr15:93226412..93227365,2	MCF-7	breast:
2	chr15:93155064..93156959-chr15:93181912..93184723,2	K562	blood:
3	chr15:93155538..93157198-chr15:93256729..93258273,2	MCF-7	breast:
4	chr15:93151753..93155694-chr15:93155809..93157941,4	MCF-7	breast:
5	chr15:93156262..93161664-chr15:93196023..93200716,9	MCF-7	breast:
6	chr15:93155996..93163499-chr15:93183947..93191862,21	MCF-7	breast:
7	chr15:93154756..93169106-chr15:93177301..93183879,27	MCF-7	breast:
8	chr15:93155445..93158286-chr15:93162405..93165146,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000185442	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12593636	1.00[ASN][1000 genomes]
rs16947098	1.00[ASN][1000 genomes]
rs16947102	1.00[ASN][1000 genomes]
rs2254142	1.00[ASN][1000 genomes]
rs285754	1.00[ASN][1000 genomes]
rs285755	1.00[ASN][1000 genomes]
rs285757	1.00[ASN][1000 genomes]
rs285758	1.00[ASN][1000 genomes]
rs285772	1.00[ASN][1000 genomes]
rs366789	1.00[ASN][1000 genomes]
rs426221	1.00[ASN][1000 genomes]
rs72758232	1.00[ASN][1000 genomes]
rs72758234	1.00[ASN][1000 genomes]
rs72758301	1.00[ASN][1000 genomes]
rs73454730	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948621	chr15:92688981-93158095	Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv1037972	chr15:92804908-93270761	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
3	nsv904499	chr15:92914795-93472582	Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	163 gene(s)	inside rSNPs	diseases
4	nsv948738	chr15:93070742-93728147	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	169 gene(s)	inside rSNPs	diseases
5	nsv1049490	chr15:93134405-93591660	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	151 gene(s)	inside rSNPs	diseases
6	esv1808537	chr15:93146057-93191935	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:93139400-93159800	Weak transcription	Fetal Lung	lung
2	chr15:93142200-93160400	Weak transcription	Right Atrium	heart
3	chr15:93143600-93160000	Weak transcription	Right Ventricle	heart
4	chr15:93146800-93160000	Weak transcription	Psoas Muscle	Psoas
5	chr15:93150000-93160600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr15:93150200-93157000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr15:93151200-93157200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr15:93151200-93160200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr15:93151400-93157600	Weak transcription	Fetal Intestine Small	intestine
10	chr15:93151400-93167400	Weak transcription	Brain Germinal Matrix	brain
11	chr15:93151600-93158600	Weak transcription	HSMMtube	muscle
12	chr15:93151600-93159600	Weak transcription	HSMM	muscle
13	chr15:93151600-93178000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr15:93152600-93158000	Weak transcription	Fetal Muscle Trunk	muscle
15	chr15:93152800-93166800	Weak transcription	Esophagus	oesophagus
16	chr15:93153000-93157200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr15:93153000-93159600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr15:93154200-93159800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr15:93154200-93159800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr15:93154200-93160000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr15:93154800-93160600	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr15:93155000-93160600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr15:93155600-93159000	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr15:93155800-93159600	Weak transcription	Ovary	ovary
25	chr15:93156000-93157200	Strong transcription	Fetal Muscle Leg	muscle
26	chr15:93156000-93160200	Enhancers	Stomach Mucosa	stomach
27	chr15:93156000-93160400	Weak transcription	Rectal Smooth Muscle	rectum
28	chr15:93156000-93167000	Weak transcription	Brain Anterior Caudate	brain
29	chr15:93156200-93157600	Strong transcription	HUES6 Cell Line	embryonic stem cell
30	chr15:93156200-93159600	Weak transcription	Stomach Smooth Muscle	stomach
31	chr15:93156400-93158200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
32	chr15:93156400-93160200	Strong transcription	Fetal Stomach	stomach
33	chr15:93156400-93167600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr15:93156600-93162600	Weak transcription	Brain Angular Gyrus	brain
35	chr15:93156600-93162600	Weak transcription	Brain Hippocampus Middle	brain
36	chr15:93156600-93163200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr15:93156600-93163600	Enhancers	Pancreas	Pancrea
38	chr15:93156600-93168400	Weak transcription	Pancreatic Islets	Pancreatic Islet
39	chr15:93156800-93157000	Weak transcription	Lung	lung
40	chr15:93156800-93157000	Enhancers	Skeletal Muscle Male	skeletal muscle
41	chr15:93156800-93157200	Weak transcription	Gastric	stomach
42	chr15:93156800-93160400	Weak transcription	Colon Smooth Muscle	Colon
43	chr15:93156800-93162600	Weak transcription	Aorta	Aorta
44	chr15:93156800-93166600	Weak transcription	Brain Cingulate Gyrus	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links