Variant report

Variant	rs366789
Chromosome Location	chr15:93189529-93189530
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF263	chr15:93189291-93189772	HEK293-T-REx	kidney:	n/a	chr15:93189291-93189312
2	SIN3AK20	chr15:93186851-93189903	MCF-7	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr15:93143897..93146395-chr15:93188108..93190143,2	MCF-7	breast:
2	chr15:93188112..93190385-chr15:93199041..93201879,2	K562	blood:
3	chr15:93187167..93190385-chr15:93197959..93201879,3	K562	blood:
4	chr1:149857354..149859026-chr15:93189018..93191776,2	MCF-7	breast:

Variant related genes	Relation type
FAM174B	TF binding region
ENSG00000185442	Chromatin interaction
ENSG00000184678	Chromatin interaction
ENSG00000184260	Chromatin interaction
ENSG00000271763	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs12443091	0.83[EUR][1000 genomes]
rs12593636	1.00[ASN][1000 genomes]
rs12908852	0.82[EUR][1000 genomes]
rs1496712	0.84[EUR][1000 genomes]
rs1496726	0.85[EUR][1000 genomes]
rs16947098	1.00[ASN][1000 genomes]
rs16947102	1.00[ASN][1000 genomes]
rs16974307	0.85[EUR][1000 genomes]
rs184048	0.81[EUR][1000 genomes]
rs2254142	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2453901	0.85[EUR][1000 genomes]
rs285754	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs285755	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs285757	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs285758	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs285766	0.84[EUR][1000 genomes]
rs285772	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs413450	0.82[EUR][1000 genomes]
rs426221	1.00[ASN][1000 genomes]
rs503112	0.82[EUR][1000 genomes]
rs6496969	0.84[EUR][1000 genomes]
rs7178546	0.85[EUR][1000 genomes]
rs72758232	1.00[ASN][1000 genomes]
rs72758234	1.00[ASN][1000 genomes]
rs72758301	1.00[ASN][1000 genomes]
rs73454725	1.00[ASN][1000 genomes]
rs73454730	1.00[ASN][1000 genomes]
rs893379	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037972	chr15:92804908-93270761	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
2	nsv904499	chr15:92914795-93472582	Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	163 gene(s)	inside rSNPs	diseases
3	nsv948738	chr15:93070742-93728147	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	169 gene(s)	inside rSNPs	diseases
4	nsv1049490	chr15:93134405-93591660	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	151 gene(s)	inside rSNPs	diseases
5	esv1808537	chr15:93146057-93191935	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv1040501	chr15:93177153-93286393	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs366789	LOC400451	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:93171000-93197400	Weak transcription	Primary T cells from cord blood	blood
2	chr15:93182000-93197800	Weak transcription	Small Intestine	intestine
3	chr15:93182400-93190600	Weak transcription	Psoas Muscle	Psoas
4	chr15:93182400-93191200	Weak transcription	Stomach Smooth Muscle	stomach
5	chr15:93182600-93197200	Weak transcription	Fetal Kidney	kidney
6	chr15:93183200-93198400	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr15:93186000-93190600	Weak transcription	Fetal Intestine Small	intestine
8	chr15:93186400-93194200	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr15:93186800-93190000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr15:93186800-93191400	Enhancers	Stomach Mucosa	stomach
11	chr15:93186800-93192800	Enhancers	HUVEC	blood vessel
12	chr15:93187000-93189600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr15:93187000-93190200	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr15:93187000-93190400	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr15:93187000-93190600	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr15:93187200-93190200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr15:93187200-93193000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
18	chr15:93187400-93190200	Weak transcription	HSMM	muscle
19	chr15:93187400-93192000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr15:93187400-93193200	Enhancers	H1 Cell Line	embryonic stem cell
21	chr15:93187400-93194000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr15:93187400-93194000	Enhancers	HUES64 Cell Line	embryonic stem cell
23	chr15:93187600-93191000	Enhancers	Pancreas	Pancrea
24	chr15:93187600-93195800	Weak transcription	Brain Angular Gyrus	brain
25	chr15:93187800-93190400	Enhancers	iPS-18 Cell Line	embryonic stem cell
26	chr15:93187800-93195600	Weak transcription	Fetal Muscle Trunk	muscle
27	chr15:93188200-93190400	Enhancers	HUES48 Cell Line	embryonic stem cell
28	chr15:93188200-93192200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr15:93188200-93193000	Enhancers	H9 Cell Line	embryonic stem cell
30	chr15:93188400-93192400	Enhancers	iPS-15b Cell Line	embryonic stem cell
31	chr15:93188400-93192400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr15:93188600-93190400	Weak transcription	Right Atrium	heart
33	chr15:93188800-93189800	Weak transcription	Pancreatic Islets	Pancreatic Islet
34	chr15:93189000-93193400	Weak transcription	Fetal Stomach	stomach
35	chr15:93189000-93194000	Weak transcription	Primary hematopoietic stem cells	blood
36	chr15:93189000-93195600	Weak transcription	Rectal Mucosa Donor 31	rectum
37	chr15:93189000-93197000	Weak transcription	Brain Hippocampus Middle	brain
38	chr15:93189200-93190400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr15:93189200-93190400	Weak transcription	Skeletal Muscle Female	skeletal muscle
40	chr15:93189200-93190600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
41	chr15:93189200-93195200	Weak transcription	Skeletal Muscle Male	skeletal muscle
42	chr15:93189200-93195400	Weak transcription	Right Ventricle	heart
43	chr15:93189400-93190400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr15:93189400-93190400	Weak transcription	Gastric	stomach
45	chr15:93189400-93191600	Weak transcription	Left Ventricle	heart
46	chr15:93189400-93191600	Weak transcription	Lung	lung
47	chr15:93189400-93191600	Weak transcription	GM12878-XiMat	blood
48	chr15:93189400-93193600	Weak transcription	Fetal Lung	lung
49	chr15:93189400-93193600	Weak transcription	Placenta	Placenta
50	chr15:93189400-93194000	Weak transcription	Fetal Muscle Leg	muscle

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