Variant report

Variant	rs17648679
Chromosome Location	chr15:51974113-51974114
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs17705035	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv471243	chr15:51345485-52018096	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv904219	chr15:51851999-51977159	Flanking Active TSS Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	18 gene(s)	inside rSNPs	n/a
3	nsv457139	chr15:51854718-51977159	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	18 gene(s)	inside rSNPs	n/a
4	nsv569407	chr15:51854718-51977159	Flanking Active TSS Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	18 gene(s)	inside rSNPs	n/a
5	nsv1035967	chr15:51949866-52008736	Bivalent Enhancer Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:51973000-51974200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr15:51973000-51974400	Active TSS	H9 Cell Line	embryonic stem cell
3	chr15:51973000-51974400	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr15:51973000-51974600	Active TSS	ES-I3 Cell Line	embryonic stem cell
5	chr15:51973000-51974600	Active TSS	HUES6 Cell Line	embryonic stem cell
6	chr15:51973000-51974800	Active TSS	Pancreatic Islets	Pancreatic Islet
7	chr15:51973000-51975000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
8	chr15:51973000-51975000	Active TSS	Fetal Brain Female	brain
9	chr15:51973000-51975400	Active TSS	Brain Inferior Temporal Lobe	brain
10	chr15:51973200-51974200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr15:51973200-51974200	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
12	chr15:51973200-51974200	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
13	chr15:51973200-51974200	Enhancers	Placenta	Placenta
14	chr15:51973200-51974400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr15:51973200-51974600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
16	chr15:51973200-51974600	Active TSS	H1 Cell Line	embryonic stem cell
17	chr15:51973200-51974600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
18	chr15:51973200-51974800	Active TSS	HUES48 Cell Line	embryonic stem cell
19	chr15:51973200-51974800	Active TSS	HUES64 Cell Line	embryonic stem cell
20	chr15:51973200-51974800	Active TSS	iPS-15b Cell Line	embryonic stem cell
21	chr15:51973400-51974200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr15:51973400-51974200	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr15:51973400-51974200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr15:51973400-51974200	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr15:51973400-51974200	Enhancers	Liver	Liver
26	chr15:51973400-51974200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
27	chr15:51973400-51974200	Enhancers	Pancreas	Pancrea
28	chr15:51973400-51974200	Bivalent Enhancer	Sigmoid Colon	Sigmoid Colon
29	chr15:51973400-51974200	Bivalent Enhancer	Stomach Mucosa	stomach
30	chr15:51973400-51974200	Enhancers	Spleen	Spleen
31	chr15:51973400-51974400	Active TSS	Brain Anterior Caudate	brain
32	chr15:51973400-51974600	Active TSS	iPS-18 Cell Line	embryonic stem cell
33	chr15:51973400-51974600	Active TSS	Brain Cingulate Gyrus	brain
34	chr15:51973400-51975400	Active TSS	iPS-20b Cell Line	embryonic stem cell
35	chr15:51973600-51974200	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr15:51973600-51974200	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr15:51973600-51974200	Active TSS	Brain Substantia Nigra	brain
38	chr15:51973600-51974200	Bivalent/Poised TSS	Fetal Intestine Small	intestine
39	chr15:51973600-51974200	Bivalent/Poised TSS	Fetal Stomach	stomach
40	chr15:51973600-51974200	Enhancers	NH-A	brain
41	chr15:51973600-51974400	Active TSS	Brain Hippocampus Middle	brain
42	chr15:51973600-51974600	Active TSS	Fetal Brain Male	brain
43	chr15:51973600-51974600	Active TSS	K562	blood
44	chr15:51973600-51975200	Active TSS	Brain Angular Gyrus	brain
45	chr15:51973800-51974200	Bivalent Enhancer	Primary B cells from cord blood	blood
46	chr15:51973800-51974200	Bivalent Enhancer	Primary B cells from peripheral blood	blood
47	chr15:51973800-51974200	Flanking Active TSS	Adipose Nuclei	Adipose
48	chr15:51973800-51974200	Flanking Bivalent TSS/Enh	Fetal Intestine Large	intestine
49	chr15:51973800-51974200	Bivalent Enhancer	A549	lung
50	chr15:51974000-51974200	Flanking Bivalent TSS/Enh	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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