Variant report
Variant | rs17705035 |
---|---|
Chromosome Location | chr15:51924335-51924336 |
allele | C/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:10)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:10 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr15:51923743..51925497-chr15:51937035..51939547,2 | K562 | blood: | |
2 | chr15:51915278..51917337-chr15:51922529..51924335,2 | K562 | blood: | |
3 | chr15:51923873..51926717-chr15:51934100..51936928,2 | MCF-7 | breast: | |
4 | chr15:51914090..51916828-chr15:51923962..51929306,7 | MCF-7 | breast: | |
5 | chr15:51913840..51916895-chr15:51922199..51924980,3 | MCF-7 | breast: | |
6 | chr15:51909586..51911705-chr15:51923357..51924958,2 | K562 | blood: | |
7 | chr15:51912936..51917955-chr15:51918196..51927378,13 | K562 | blood: | |
8 | chr15:51922746..51924870-chr15:51925767..51927937,2 | K562 | blood: | |
9 | chr15:51917039..51918667-chr15:51922203..51924591,2 | MCF-7 | breast: | |
10 | chr15:51922833..51924465-chr15:51927296..51928941,2 | MCF-7 | breast: |
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000104093 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs1010486 | 0.98[ASN][1000 genomes] |
rs1017679 | 0.85[CHB][hapmap] |
rs10519310 | 0.84[ASN][1000 genomes] |
rs10519314 | 1.00[CHB][hapmap];0.87[ASN][1000 genomes] |
rs10519315 | 1.00[CHB][hapmap];0.87[ASN][1000 genomes] |
rs10519316 | 1.00[CHB][hapmap];0.87[ASN][1000 genomes] |
rs10519318 | 1.00[CHB][hapmap];0.87[ASN][1000 genomes] |
rs10519319 | 1.00[CHB][hapmap];0.87[ASN][1000 genomes] |
rs10519320 | 1.00[CHB][hapmap];0.87[ASN][1000 genomes] |
rs10519321 | 1.00[CHB][hapmap];0.87[ASN][1000 genomes] |
rs1471072 | 0.85[CHB][hapmap] |
rs16964389 | 0.84[ASN][1000 genomes] |
rs16964465 | 1.00[CHB][hapmap];0.87[AMR][1000 genomes];0.87[ASN][1000 genomes] |
rs16964476 | 1.00[CHB][hapmap];0.87[AMR][1000 genomes];0.87[ASN][1000 genomes] |
rs17648565 | 1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[ASN][1000 genomes] |
rs17648679 | 0.82[JPT][hapmap] |
rs17648801 | 1.00[CHB][hapmap];0.87[ASN][1000 genomes] |
rs2124588 | 1.00[CHB][hapmap];0.87[ASN][1000 genomes] |
rs2124589 | 0.87[ASN][1000 genomes] |
rs2124590 | 0.87[ASN][1000 genomes] |
rs2271674 | 1.00[CHB][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs2271676 | 1.00[CHB][hapmap];0.87[AMR][1000 genomes] |
rs2305709 | 1.00[CHB][hapmap];0.87[ASN][1000 genomes] |
rs2305711 | 0.87[ASN][1000 genomes] |
rs2305715 | 0.87[ASN][1000 genomes] |
rs2305719 | 1.00[CHB][hapmap];0.87[ASN][1000 genomes] |
rs2622770 | 0.85[CHB][hapmap];0.81[ASN][1000 genomes] |
rs3214014 | 0.87[ASN][1000 genomes] |
rs3736484 | 0.80[AFR][1000 genomes];0.85[AMR][1000 genomes] |
rs3751584 | 0.82[JPT][hapmap] |
rs3764220 | 1.00[CHB][hapmap];0.87[AMR][1000 genomes];0.87[ASN][1000 genomes] |
rs3765067 | 0.85[ASN][1000 genomes] |
rs3809498 | 1.00[CHB][hapmap];0.87[AMR][1000 genomes];0.87[ASN][1000 genomes] |
rs3816544 | 1.00[CHB][hapmap];0.87[ASN][1000 genomes] |
rs41286490 | 0.87[ASN][1000 genomes] |
rs41286492 | 1.00[CHB][hapmap];0.85[ASN][1000 genomes] |
rs55803403 | 0.80[ASN][1000 genomes] |
rs56127635 | 0.84[ASN][1000 genomes] |
rs57860217 | 0.80[ASN][1000 genomes] |
rs60337239 | 0.87[ASN][1000 genomes] |
rs60437890 | 0.87[AMR][1000 genomes];0.87[ASN][1000 genomes] |
rs60934476 | 0.87[ASN][1000 genomes] |
rs61642433 | 0.87[AMR][1000 genomes];0.92[ASN][1000 genomes] |
rs7163359 | 1.00[CHB][hapmap];0.85[JPT][hapmap];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rs7174397 | 0.87[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rs74013220 | 0.87[AMR][1000 genomes] |
rs74013290 | 0.87[ASN][1000 genomes] |
rs8023804 | 0.87[AMR][1000 genomes];0.87[ASN][1000 genomes] |
rs8032454 | 0.96[ASN][1000 genomes] |
rs977137 | 1.00[CHB][hapmap];0.85[JPT][hapmap];0.87[AMR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv471243 | chr15:51345485-52018096 | Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 39 gene(s) | inside rSNPs | diseases |
2 | nsv904219 | chr15:51851999-51977159 | Flanking Active TSS Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive region | 18 gene(s) | inside rSNPs | n/a |
3 | nsv457139 | chr15:51854718-51977159 | Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive region | 18 gene(s) | inside rSNPs | n/a |
4 | nsv569407 | chr15:51854718-51977159 | Flanking Active TSS Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive region | 18 gene(s) | inside rSNPs | n/a |
5 | nsv569408 | chr15:51867172-51946100 | Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Strong transcription | TF binding regionCpG islandChromatin interactive region | 15 gene(s) | inside rSNPs | n/a |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr15:51922000-51926600 | Weak transcription | Primary hematopoietic stem cells G-CSF-mobilized Male | -- |
2 | chr15:51922200-51925400 | Weak transcription | K562 | blood |
3 | chr15:51922200-51926600 | Weak transcription | Primary hematopoietic stem cells short term culture | blood |
4 | chr15:51923000-51926400 | Weak transcription | Primary neutrophils fromperipheralblood | blood |
5 | chr15:51923400-51926400 | Weak transcription | Monocytes-CD14+_RO01746 | blood |
6 | chr15:51923600-51926400 | Weak transcription | Primary monocytes fromperipheralblood | blood |