Variant report

Variant	rs17648565
Chromosome Location	chr15:51925204-51925205
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:51923743..51925497-chr15:51937035..51939547,2	K562	blood:
2	chr15:51923873..51926717-chr15:51934100..51936928,2	MCF-7	breast:
3	chr15:51914090..51916828-chr15:51923962..51929306,7	MCF-7	breast:
4	chr15:51918937..51922690-chr15:51924862..51927383,3	K562	blood:
5	chr15:51912936..51917955-chr15:51918196..51927378,13	K562	blood:

Variant related genes	Relation type
ENSG00000104093	Chromatin interaction

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs1010486	0.98[ASN][1000 genomes]
rs1017679	0.85[CHB][hapmap]
rs10519310	0.84[ASN][1000 genomes]
rs10519314	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs10519315	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs10519316	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs10519318	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs10519319	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs10519320	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs10519321	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs1471072	0.85[CHB][hapmap]
rs16964389	0.84[ASN][1000 genomes]
rs16964465	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs16964476	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs17648801	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs17705035	1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[ASN][1000 genomes]
rs2124588	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs2124589	0.87[ASN][1000 genomes]
rs2124590	1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2271674	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs2271676	1.00[CHB][hapmap]
rs2305709	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs2305711	0.87[ASN][1000 genomes]
rs2305715	0.87[ASN][1000 genomes]
rs2305719	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs2622770	0.85[CHB][hapmap];0.81[ASN][1000 genomes]
rs3214014	1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs3764220	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs3765067	0.85[ASN][1000 genomes]
rs3809498	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs3816544	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs41286490	0.87[ASN][1000 genomes]
rs41286492	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs55803403	0.80[ASN][1000 genomes]
rs56127635	0.84[ASN][1000 genomes]
rs57860217	0.80[ASN][1000 genomes]
rs60337239	0.87[ASN][1000 genomes]
rs60437890	0.87[ASN][1000 genomes]
rs60934476	0.87[ASN][1000 genomes]
rs61642433	0.92[ASN][1000 genomes]
rs7163359	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7174397	1.00[ASN][1000 genomes]
rs74013290	0.87[ASN][1000 genomes]
rs8023804	0.87[ASN][1000 genomes]
rs8032454	0.96[ASN][1000 genomes]
rs977137	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv471243	chr15:51345485-52018096	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv904219	chr15:51851999-51977159	Flanking Active TSS Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	18 gene(s)	inside rSNPs	n/a
3	nsv457139	chr15:51854718-51977159	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	18 gene(s)	inside rSNPs	n/a
4	nsv569407	chr15:51854718-51977159	Flanking Active TSS Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	18 gene(s)	inside rSNPs	n/a
5	nsv569408	chr15:51867172-51946100	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region	15 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:51922000-51926600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr15:51922200-51925400	Weak transcription	K562	blood
3	chr15:51922200-51926600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr15:51923000-51926400	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr15:51923400-51926400	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr15:51923600-51926400	Weak transcription	Primary monocytes fromperipheralblood	blood

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