Variant report

Variant	rs8032454
Chromosome Location	chr15:51885462-51885463
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs1010486	0.94[ASN][1000 genomes]
rs10519310	0.87[ASN][1000 genomes]
rs10519314	0.83[ASN][1000 genomes]
rs10519315	0.83[ASN][1000 genomes]
rs10519316	0.83[ASN][1000 genomes]
rs10519318	0.83[ASN][1000 genomes]
rs10519319	0.83[ASN][1000 genomes]
rs10519320	0.83[ASN][1000 genomes]
rs10519321	0.83[ASN][1000 genomes]
rs1599034	0.81[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs16964389	0.87[ASN][1000 genomes]
rs16964465	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs16964476	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs17648565	0.96[ASN][1000 genomes]
rs17648801	0.83[ASN][1000 genomes]
rs17705035	0.96[ASN][1000 genomes]
rs2124588	0.83[ASN][1000 genomes]
rs2124589	0.83[ASN][1000 genomes]
rs2124590	0.83[ASN][1000 genomes]
rs2271674	0.80[ASN][1000 genomes]
rs2305709	0.83[ASN][1000 genomes]
rs2305711	0.83[ASN][1000 genomes]
rs2305715	0.83[ASN][1000 genomes]
rs2305719	0.83[ASN][1000 genomes]
rs3214014	0.83[ASN][1000 genomes]
rs3764220	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs3765067	0.82[ASN][1000 genomes]
rs3809498	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs3816544	0.83[ASN][1000 genomes]
rs41286490	0.83[ASN][1000 genomes]
rs41286492	0.82[ASN][1000 genomes]
rs55803403	0.84[ASN][1000 genomes]
rs56127635	0.87[ASN][1000 genomes]
rs56879579	0.80[ASN][1000 genomes]
rs57860217	0.84[ASN][1000 genomes]
rs60337239	0.83[ASN][1000 genomes]
rs60437890	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs60934476	0.83[ASN][1000 genomes]
rs61642433	0.96[ASN][1000 genomes]
rs7163359	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7174397	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs73399525	0.80[ASN][1000 genomes]
rs74013220	0.80[ASN][1000 genomes]
rs74013290	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs8023804	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs8038520	0.80[ASN][1000 genomes]
rs9806124	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv471243	chr15:51345485-52018096	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv569405	chr15:51791559-51890282	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv457138	chr15:51838719-51890282	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv569406	chr15:51838719-51890282	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv904219	chr15:51851999-51977159	Flanking Active TSS Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	18 gene(s)	inside rSNPs	n/a
6	nsv457139	chr15:51854718-51977159	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	18 gene(s)	inside rSNPs	n/a
7	nsv569407	chr15:51854718-51977159	Flanking Active TSS Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	18 gene(s)	inside rSNPs	n/a
8	nsv569408	chr15:51867172-51946100	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region	15 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:51869600-51889600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr15:51875400-51891400	Weak transcription	K562	blood
3	chr15:51884000-51889200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr15:51884200-51889400	Weak transcription	Primary monocytes fromperipheralblood	blood

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