Variant report

Variant	rs17651489
Chromosome Location	chr11:106691518-106691519
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11211920	0.95[ASN][1000 genomes]
rs11211938	0.90[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs11211939	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11211945	0.82[ASN][1000 genomes]
rs12363827	0.90[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1487890	0.95[ASN][1000 genomes]
rs67110749	0.82[ASN][1000 genomes]
rs7113519	0.80[ASN][1000 genomes]
rs7113801	0.93[ASN][1000 genomes]
rs7950351	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv556230	chr11:106676942-106704250	Weak transcription Enhancers ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:106679200-106692200	Weak transcription	Ovary	ovary
2	chr11:106689600-106699800	Weak transcription	Fetal Heart	heart
3	chr11:106691200-106692800	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr11:106691200-106693600	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr11:106691200-106693600	Enhancers	Fetal Lung	lung
6	chr11:106691400-106692800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr11:106691400-106694600	Enhancers	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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