Variant report

Variant	rs1487890
Chromosome Location	chr11:106685081-106685082
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11211920	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11211938	0.90[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs11211939	0.93[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs11211945	0.83[ASN][1000 genomes]
rs11524439	0.81[AFR][1000 genomes]
rs12363827	0.93[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs17651489	0.95[ASN][1000 genomes]
rs35636240	0.83[ASN][1000 genomes]
rs67110749	0.83[ASN][1000 genomes]
rs7109075	0.84[ASN][1000 genomes]
rs7113519	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7113801	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7950351	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv556230	chr11:106676942-106704250	Weak transcription Enhancers ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:106679200-106692200	Weak transcription	Ovary	ovary
2	chr11:106681000-106686400	Weak transcription	Pancreas	Pancrea

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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