Variant report

Variant	rs11211945
Chromosome Location	chr11:106722896-106722897
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11211920	0.83[ASN][1000 genomes]
rs11211938	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11211939	0.82[ASN][1000 genomes]
rs11524439	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12363827	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1487890	0.83[ASN][1000 genomes]
rs17651489	0.82[ASN][1000 genomes]
rs1944195	0.82[ASN][1000 genomes]
rs35636240	0.97[ASN][1000 genomes]
rs67110749	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7109075	0.95[ASN][1000 genomes]
rs7113801	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898362	chr11:106715879-106809457	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1036990	chr11:106718613-106774766	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv541162	chr11:106718613-106774766	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs11211945	CWF19L2	cis	cerebellum	SCAN
rs11211945	RDX	cis	parietal	SCAN
rs11211945	EXPH5	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:106719200-106730400	Weak transcription	Fetal Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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