Variant report

Variant	rs11524439
Chromosome Location	chr11:106724962-106724963
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11211938	0.87[AFR][1000 genomes]
rs11211939	0.87[AFR][1000 genomes]
rs11211945	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12363827	0.87[AFR][1000 genomes]
rs1487890	0.81[AFR][1000 genomes]
rs35636240	0.86[ASN][1000 genomes]
rs67110749	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7109075	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898362	chr11:106715879-106809457	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1036990	chr11:106718613-106774766	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv541162	chr11:106718613-106774766	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:106719200-106730400	Weak transcription	Fetal Lung	lung
2	chr11:106724600-106725000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr11:106724600-106725600	ZNF genes & repeats	Fetal Stomach	stomach
4	chr11:106724600-106726000	ZNF genes & repeats	Pancreas	Pancrea
5	chr11:106724800-106725000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr11:106724800-106725400	ZNF genes & repeats	Spleen	Spleen
7	chr11:106724800-106725600	Weak transcription	Right Ventricle	heart
8	chr11:106724800-106726000	ZNF genes & repeats	Fetal Intestine Small	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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