Variant report

Variant	rs17651589
Chromosome Location	chr2:57027804-57027805
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs1008079	0.87[EUR][1000 genomes]
rs1016542	0.91[JPT][hapmap]
rs10169833	0.88[EUR][1000 genomes]
rs10185784	0.91[EUR][1000 genomes]
rs10190939	0.81[EUR][1000 genomes]
rs10193496	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10193597	0.81[EUR][1000 genomes]
rs10199089	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11125650	0.88[EUR][1000 genomes]
rs11125651	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11125652	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11125660	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11678164	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11684449	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11889516	0.89[EUR][1000 genomes]
rs12619277	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13389774	0.90[EUR][1000 genomes]
rs13392863	0.84[EUR][1000 genomes]
rs13427440	0.96[EUR][1000 genomes]
rs17048326	0.86[EUR][1000 genomes]
rs17048328	0.87[EUR][1000 genomes]
rs17048412	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17048414	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17048423	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17048424	0.91[ASN][1000 genomes]
rs17269063	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1996705	0.95[EUR][1000 genomes]
rs2042118	0.81[EUR][1000 genomes]
rs2042119	0.86[EUR][1000 genomes]
rs2042120	0.84[EUR][1000 genomes]
rs2058993	0.80[EUR][1000 genomes]
rs2072584	0.86[EUR][1000 genomes]
rs2072585	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2112028	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2161032	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2216494	0.88[EUR][1000 genomes]
rs4140686	0.89[EUR][1000 genomes]
rs4140687	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4544483	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4566401	0.83[EUR][1000 genomes]
rs4671296	0.87[EUR][1000 genomes]
rs55695937	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56050106	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs59647856	0.86[EUR][1000 genomes]
rs60966744	0.86[EUR][1000 genomes]
rs62162355	0.83[EUR][1000 genomes]
rs62163429	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6719274	0.95[EUR][1000 genomes]
rs6722540	0.92[EUR][1000 genomes]
rs6730195	0.89[EUR][1000 genomes]
rs6732705	0.82[EUR][1000 genomes]
rs6735845	0.95[EUR][1000 genomes]
rs6742821	0.84[EUR][1000 genomes]
rs718999	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7556866	0.84[EUR][1000 genomes]
rs7557250	0.85[EUR][1000 genomes]
rs7577567	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7587789	0.95[EUR][1000 genomes]
rs918331	0.89[EUR][1000 genomes]
rs977375	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008859	chr2:56767452-57126026	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv535726	chr2:56767452-57126026	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv582059	chr2:56892585-57175087	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv535727	chr2:56895497-57059359	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1007347	chr2:56904928-57100439	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv582060	chr2:56941668-57137622	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1002180	chr2:57019964-57130245	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:57027800-57028000	Enhancers	Gastric	stomach

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