Variant report

Variant	rs55695937
Chromosome Location	chr2:56968667-56968668
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs1008079	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10169833	0.86[EUR][1000 genomes]
rs10185784	0.82[EUR][1000 genomes]
rs10190939	0.85[EUR][1000 genomes]
rs10193496	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10199089	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11125650	0.91[EUR][1000 genomes]
rs11125651	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11125652	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11125660	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11678164	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11684449	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11889516	0.88[EUR][1000 genomes]
rs12619277	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13389774	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13392863	0.88[EUR][1000 genomes]
rs13427440	0.84[EUR][1000 genomes]
rs17048326	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17048328	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17048349	0.89[ASN][1000 genomes]
rs17048412	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17048414	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17048423	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17048424	0.82[ASN][1000 genomes]
rs17269063	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17651589	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1996705	0.85[EUR][1000 genomes]
rs2042118	0.83[EUR][1000 genomes]
rs2042119	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2042120	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2058993	0.89[EUR][1000 genomes]
rs2072584	0.93[EUR][1000 genomes]
rs2072585	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2112028	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2161032	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2216494	0.87[EUR][1000 genomes]
rs4140686	0.88[EUR][1000 genomes]
rs4140687	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4544483	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4566401	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4671296	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs56050106	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57647685	0.85[ASN][1000 genomes]
rs59647856	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs60966744	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62162355	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62163429	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6719274	0.84[EUR][1000 genomes]
rs6722540	0.82[EUR][1000 genomes]
rs6730195	0.88[EUR][1000 genomes]
rs6732705	0.85[EUR][1000 genomes]
rs6735845	0.83[EUR][1000 genomes]
rs6742821	0.86[EUR][1000 genomes]
rs718999	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7556866	0.88[EUR][1000 genomes]
rs7557250	0.88[EUR][1000 genomes]
rs7577567	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7587789	0.85[EUR][1000 genomes]
rs918331	0.88[EUR][1000 genomes]
rs977375	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008859	chr2:56767452-57126026	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv535726	chr2:56767452-57126026	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv582058	chr2:56892585-57016392	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv582059	chr2:56892585-57175087	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv535727	chr2:56895497-57059359	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1007347	chr2:56904928-57100439	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv582060	chr2:56941668-57137622	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:56968000-56968800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr2:56968000-56968800	Enhancers	HMEC	breast
3	chr2:56968000-56968800	Enhancers	NH-A	brain
4	chr2:56968000-56968800	Enhancers	NHEK	skin
5	chr2:56968000-56970800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr2:56968200-56968800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr2:56968200-56968800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr2:56968200-56968800	Enhancers	Hela-S3	cervix
9	chr2:56968200-56968800	Enhancers	NHDF-Ad	bronchial
10	chr2:56968200-56968800	Enhancers	Osteobl	bone
11	chr2:56968200-56969000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr2:56968200-56969200	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr2:56968200-56969600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr2:56968200-56970200	Enhancers	Placenta Amnion	Placenta Amnion
15	chr2:56968400-56968800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr2:56968400-56968800	Enhancers	Adipose Nuclei	Adipose
17	chr2:56968400-56968800	Flanking Active TSS	A549	lung
18	chr2:56968400-56969200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr2:56968400-56969200	Flanking Active TSS	HSMMtube	muscle
20	chr2:56968400-56969200	Enhancers	HUVEC	blood vessel
21	chr2:56968400-56969600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr2:56968600-56968800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr2:56968600-56968800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
24	chr2:56968600-56969000	Enhancers	HUES6 Cell Line	embryonic stem cell
25	chr2:56968600-56969000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr2:56968600-56969200	Active TSS	HSMM	muscle

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