Variant report

Variant	rs6732705
Chromosome Location	chr2:56909752-56909753
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs1008079	0.86[EUR][1000 genomes]
rs1016542	0.93[CEU][hapmap]
rs10169833	0.86[EUR][1000 genomes]
rs10185784	0.83[EUR][1000 genomes]
rs10190939	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10193496	0.86[EUR][1000 genomes]
rs10199089	0.83[EUR][1000 genomes]
rs11125650	0.87[EUR][1000 genomes]
rs11125651	0.84[EUR][1000 genomes]
rs11125652	0.83[EUR][1000 genomes]
rs11678164	0.86[EUR][1000 genomes]
rs11684449	0.82[EUR][1000 genomes]
rs11889516	0.89[EUR][1000 genomes]
rs12619277	0.81[EUR][1000 genomes]
rs13389774	0.92[EUR][1000 genomes]
rs13392863	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13411277	0.81[ASN][1000 genomes]
rs13427440	0.85[EUR][1000 genomes]
rs17048326	0.93[EUR][1000 genomes]
rs17048328	0.94[EUR][1000 genomes]
rs17269063	0.85[EUR][1000 genomes]
rs17651589	0.82[EUR][1000 genomes]
rs1996705	0.86[EUR][1000 genomes]
rs2042118	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2042119	0.93[EUR][1000 genomes]
rs2042120	0.91[EUR][1000 genomes]
rs2058993	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2072584	0.90[EUR][1000 genomes]
rs2072585	0.85[EUR][1000 genomes]
rs2112028	0.84[EUR][1000 genomes]
rs2161032	0.86[EUR][1000 genomes]
rs2216494	0.87[EUR][1000 genomes]
rs2870077	0.91[EUR][1000 genomes]
rs4140686	0.89[EUR][1000 genomes]
rs4140687	0.84[EUR][1000 genomes]
rs4544483	0.86[EUR][1000 genomes]
rs4566401	0.90[EUR][1000 genomes]
rs4671296	0.87[EUR][1000 genomes]
rs55695937	0.85[EUR][1000 genomes]
rs56050106	0.84[EUR][1000 genomes]
rs59647856	0.93[EUR][1000 genomes]
rs60966744	0.93[EUR][1000 genomes]
rs62162355	0.91[EUR][1000 genomes]
rs62163429	0.85[EUR][1000 genomes]
rs6719274	0.87[EUR][1000 genomes]
rs6722540	0.83[EUR][1000 genomes]
rs6728372	0.91[EUR][1000 genomes]
rs6730195	0.87[EUR][1000 genomes]
rs6735845	0.86[EUR][1000 genomes]
rs6742821	0.87[AFR][1000 genomes];0.98[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6757997	0.91[EUR][1000 genomes]
rs718999	0.83[EUR][1000 genomes]
rs7556866	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7557250	0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7577567	0.86[EUR][1000 genomes]
rs7587789	0.86[EUR][1000 genomes]
rs918331	0.88[EUR][1000 genomes]
rs977375	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012596	chr2:56761303-56916336	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv535725	chr2:56761303-56916336	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1008859	chr2:56767452-57126026	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv535726	chr2:56767452-57126026	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv874179	chr2:56817927-56957466	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv874180	chr2:56822558-56957466	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv582058	chr2:56892585-57016392	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv582059	chr2:56892585-57175087	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv535727	chr2:56895497-57059359	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv1007347	chr2:56904928-57100439	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:56906800-56909800	Enhancers	Muscle Satellite Cultured Cells	--
2	chr2:56907000-56909800	Enhancers	HSMM	muscle
3	chr2:56907200-56909800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr2:56907800-56914200	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr2:56908200-56909800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr2:56908400-56909800	Enhancers	HUVEC	blood vessel
7	chr2:56909200-56914000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr2:56909400-56914200	Weak transcription	NHEK	skin
9	chr2:56909600-56914200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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