Variant report

Variant	rs17654567
Chromosome Location	chr11:63141254-63141255
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1193643	1.00[CEU][hapmap]
rs1210379	1.00[EUR][1000 genomes]
rs17145947	1.00[CEU][hapmap]
rs17157923	1.00[CEU][hapmap]
rs17158018	1.00[CEU][hapmap]
rs17158022	1.00[CEU][hapmap]
rs17158027	1.00[EUR][1000 genomes]
rs17158192	1.00[EUR][1000 genomes]
rs1783657	1.00[CEU][hapmap]
rs3948871	1.00[EUR][1000 genomes]
rs569826	1.00[AMR][1000 genomes]
rs6591785	1.00[EUR][1000 genomes]
rs6591787	1.00[EUR][1000 genomes]
rs7102023	1.00[EUR][1000 genomes]
rs7104164	1.00[EUR][1000 genomes]
rs7106186	1.00[CEU][hapmap]
rs72542451	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051171	chr11:62987064-63835715	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
2	nsv1053585	chr11:63057767-63180308	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv555178	chr11:63078742-63197930	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:63139800-63141800	Enhancers	Liver	Liver
2	chr11:63140200-63141400	Enhancers	HepG2	liver
3	chr11:63141000-63141600	Enhancers	Pancreas	Pancrea

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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