Variant report

Variant	rs17158192
Chromosome Location	chr11:63144032-63144033
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1152250	1.00[AMR][1000 genomes]
rs1193643	1.00[AMR][1000 genomes]
rs1193648	1.00[AMR][1000 genomes]
rs1210379	1.00[EUR][1000 genomes]
rs17158027	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1723197	1.00[AMR][1000 genomes]
rs17654567	1.00[EUR][1000 genomes]
rs1783653	1.00[AMR][1000 genomes]
rs2510593	1.00[AMR][1000 genomes]
rs3019070	1.00[AMR][1000 genomes]
rs35722529	1.00[AMR][1000 genomes]
rs3948871	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58426567	1.00[AMR][1000 genomes]
rs59608657	1.00[AMR][1000 genomes]
rs6591785	1.00[EUR][1000 genomes]
rs6591787	1.00[EUR][1000 genomes]
rs7102023	1.00[EUR][1000 genomes]
rs7104164	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72542451	1.00[EUR][1000 genomes]
rs7942667	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051171	chr11:62987064-63835715	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
2	nsv1053585	chr11:63057767-63180308	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv555178	chr11:63078742-63197930	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:63141400-63153200	Weak transcription	HepG2	liver
2	chr11:63142600-63147000	Strong transcription	Liver	Liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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