Variant report

Variant	rs3948871
Chromosome Location	chr11:63041539-63041540
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1152250	1.00[AMR][1000 genomes]
rs1193643	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs1193648	1.00[AMR][1000 genomes]
rs1210379	1.00[EUR][1000 genomes]
rs17145947	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs17157906	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs17157907	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs17157909	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs17157911	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs17157912	1.00[AMR][1000 genomes]
rs17157915	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs17157923	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs17158018	1.00[CEU][hapmap]
rs17158022	1.00[CEU][hapmap]
rs17158027	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17158192	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1723197	1.00[AMR][1000 genomes]
rs17654567	1.00[EUR][1000 genomes]
rs1783653	1.00[AMR][1000 genomes]
rs1783657	1.00[CEU][hapmap]
rs2510593	1.00[AMR][1000 genomes]
rs3019070	1.00[AMR][1000 genomes]
rs35722529	1.00[AMR][1000 genomes]
rs58426567	1.00[AMR][1000 genomes]
rs59608657	1.00[AMR][1000 genomes]
rs6591785	1.00[EUR][1000 genomes]
rs6591787	1.00[EUR][1000 genomes]
rs7102023	1.00[EUR][1000 genomes]
rs7104164	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7106186	1.00[CEU][hapmap]
rs72542451	1.00[EUR][1000 genomes]
rs7942667	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045308	chr11:62803635-63109338	Active TSS Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv541059	chr11:62803635-63109338	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv555177	chr11:62847518-63110569	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv1049725	chr11:62848172-63057827	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv541060	chr11:62848172-63057827	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv1047571	chr11:62848172-63109338	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
7	nsv430397	chr11:62852616-63072310	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv897627	chr11:62984868-63119486	Active TSS Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	nsv1051171	chr11:62987064-63835715	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:63041200-63041800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr11:63041200-63042000	Enhancers	Liver	Liver
3	chr11:63041400-63041600	Enhancers	HepG2	liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links