Variant report
| Variant | rs3019070 |
|---|---|
| Chromosome Location | chr3:105818345-105818346 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs1152250 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1193643 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1193648 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17145947 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17157906 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17157907 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17157909 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17157911 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17157912 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17157915 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17157923 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17158027 | 1.00[AMR][1000 genomes] |
| rs17158192 | 1.00[AMR][1000 genomes] |
| rs1723197 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1783653 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1783657 | 1.00[EUR][1000 genomes] |
| rs2510593 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs35722529 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs3948871 | 1.00[AMR][1000 genomes] |
| rs58426567 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs59608657 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7104164 | 1.00[AMR][1000 genomes] |
| rs7106186 | 1.00[EUR][1000 genomes] |
| rs7942667 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv877312 | chr3:105560638-105916506 | Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv999883 | chr3:105687634-106007792 | Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv1011888 | chr3:105718749-106331879 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 4 | nsv536679 | chr3:105718749-106331879 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 5 | nsv822215 | chr3:105785478-105871481 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:105813000-105821400 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
