Variant report

Variant	rs17664201
Chromosome Location	chr6:49975264-49975265
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1324517	1.00[EUR][1000 genomes]
rs1324518	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17664238	1.00[CEU][hapmap]
rs55727781	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55804491	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55865419	1.00[EUR][1000 genomes]
rs56241857	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs626858	1.00[CEU][hapmap]
rs627990	1.00[CEU][hapmap];0.82[GIH][hapmap];1.00[TSI][hapmap]
rs7758921	1.00[EUR][1000 genomes]
rs780555	1.00[TSI][hapmap]
rs780557	1.00[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933942	chr6:49480550-50004231	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv5295	chr6:49955078-50007710	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs17664201	DTHD1	trans	lymphoblastoid	seeQTL
rs17664201	DSG1	trans	lymphoblastoid	seeQTL

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:49973600-49976400	Enhancers	Hela-S3	cervix
2	chr6:49975200-49976200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr6:49975200-49976200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:49975200-49976200	Enhancers	Muscle Satellite Cultured Cells	--
5	chr6:49975200-49976200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr6:49975200-49977200	Enhancers	NHEK	skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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