Variant report

Variant	rs7758921
Chromosome Location	chr6:50064897-50064898
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1033883	1.00[AFR][1000 genomes]
rs1324517	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1324518	1.00[CEU][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17664201	1.00[EUR][1000 genomes]
rs17664238	1.00[CEU][hapmap]
rs4715171	1.00[AFR][1000 genomes]
rs55727781	1.00[EUR][1000 genomes]
rs55804491	1.00[EUR][1000 genomes]
rs55865419	1.00[EUR][1000 genomes]
rs56241857	1.00[EUR][1000 genomes]
rs626858	1.00[CEU][hapmap]
rs627990	1.00[CEU][hapmap];0.82[GIH][hapmap];1.00[TSI][hapmap]
rs642141	0.84[AFR][1000 genomes]
rs679989	0.84[AFR][1000 genomes]
rs6933906	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs694258	0.91[YRI][hapmap];0.87[AFR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7758921	DTHD1	trans	lymphoblastoid	seeQTL

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:50060000-50066000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr6:50062600-50065000	Enhancers	Duodenum Smooth Muscle	Duodenum
3	chr6:50062600-50065000	Enhancers	HepG2	liver
4	chr6:50064000-50065000	Enhancers	Rectal Smooth Muscle	rectum
5	chr6:50064400-50066200	Enhancers	Fetal Brain Male	brain
6	chr6:50064600-50065200	Enhancers	Liver	Liver
7	chr6:50064600-50066000	Weak transcription	Fetal Intestine Large	intestine
8	chr6:50064600-50066400	Weak transcription	Fetal Brain Female	brain
9	chr6:50064800-50065000	Flanking Active TSS	Fetal Lung	lung
10	chr6:50064800-50065200	Enhancers	Stomach Smooth Muscle	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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