Variant report
| Variant | rs679989 |
|---|---|
| Chromosome Location | chr6:50020056-50020057 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | STAT3 | chr6:50019776-50020070 | MCF10A-Er-Src | breast: | n/a | n/a |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:50019771..50021616-chr6:50095745..50098206,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| DEFB112 | TF binding region |
rSNPs within LD-proxies of this variant (count:7)
| rs_ID | r2[population] |
|---|---|
| rs1033883 | 0.84[AFR][1000 genomes] |
| rs1324517 | 0.81[AFR][1000 genomes] |
| rs4715171 | 0.84[AFR][1000 genomes] |
| rs642141 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6933906 | 0.84[AFR][1000 genomes] |
| rs694258 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7758921 | 0.84[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3388030 | chr6:50018893-50022691 | Enhancers | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
