Variant report

Variant	rs176809
Chromosome Location	chr5:94239711-94239712
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:94234329..94237872-chr5:94238248..94241461,3	K562	blood:
2	chr5:94239647..94241678-chr5:94247268..94249334,2	MCF-7	breast:
3	chr5:94228772..94231607-chr5:94238240..94240300,3	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs159030	1.00[ASW][hapmap];0.91[CHB][hapmap]
rs159032	1.00[ASW][hapmap];0.91[CHB][hapmap];0.81[JPT][hapmap]
rs293054	0.82[CHB][hapmap];0.90[JPT][hapmap];1.00[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs293056	0.91[CHB][hapmap];0.81[JPT][hapmap]
rs293058	0.90[CHB][hapmap];0.81[JPT][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs176809	ELL2	cis	parietal	SCAN

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94165000-94240800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr5:94204400-94240600	Weak transcription	Lung	lung
3	chr5:94207200-94240400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr5:94225800-94241600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr5:94226200-94249000	Weak transcription	Left Ventricle	heart
6	chr5:94229600-94242400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr5:94229600-94243000	Weak transcription	Brain Substantia Nigra	brain
8	chr5:94230400-94248400	Weak transcription	Thymus	Thymus
9	chr5:94230600-94240400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr5:94230600-94241400	Weak transcription	Adipose Nuclei	Adipose
11	chr5:94233400-94251600	Strong transcription	Monocytes-CD14+_RO01746	blood
12	chr5:94234000-94249000	Strong transcription	Primary monocytes fromperipheralblood	blood
13	chr5:94234200-94241800	Strong transcription	Primary hematopoietic stem cells	blood
14	chr5:94234400-94240600	Weak transcription	Dnd41	blood
15	chr5:94234400-94250000	Weak transcription	Fetal Thymus	thymus
16	chr5:94237400-94239800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr5:94237600-94239800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr5:94237800-94240800	Weak transcription	GM12878-XiMat	blood
19	chr5:94237800-94241600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr5:94237800-94254200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr5:94238400-94249800	Weak transcription	Hela-S3	cervix
22	chr5:94238800-94239800	Enhancers	Muscle Satellite Cultured Cells	--
23	chr5:94239000-94239800	Enhancers	Fetal Lung	lung
24	chr5:94239000-94248600	Strong transcription	Primary neutrophils fromperipheralblood	blood
25	chr5:94239200-94243400	Strong transcription	HUVEC	blood vessel
26	chr5:94239400-94239800	Enhancers	Brain Germinal Matrix	brain
27	chr5:94239400-94241800	Strong transcription	Primary T cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links