Variant report

Variant	rs293056
Chromosome Location	chr5:94221397-94221398
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs159029	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs159030	0.94[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs159032	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs159352	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs176809	0.91[CHB][hapmap];0.81[JPT][hapmap]
rs293054	0.94[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs293058	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs40590	0.81[JPT][hapmap]

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94165000-94240800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr5:94191000-94232200	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr5:94200800-94236600	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr5:94204400-94240600	Weak transcription	Lung	lung
5	chr5:94206800-94230000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr5:94207000-94227000	Weak transcription	Primary hematopoietic stem cells	blood
7	chr5:94207200-94223600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr5:94207200-94230000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr5:94207200-94240400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr5:94209400-94223000	Weak transcription	HUVEC	blood vessel
11	chr5:94211400-94224200	Weak transcription	Primary T cells from cord blood	blood
12	chr5:94217800-94223800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr5:94218000-94231000	Strong transcription	Primary monocytes fromperipheralblood	blood
14	chr5:94219400-94223000	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr5:94219800-94221600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr5:94220000-94221800	Enhancers	Brain Germinal Matrix	brain
17	chr5:94220000-94224600	Strong transcription	Primary neutrophils fromperipheralblood	blood
18	chr5:94220200-94221400	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr5:94220200-94238200	Weak transcription	Psoas Muscle	Psoas
20	chr5:94220600-94221800	Enhancers	Fetal Kidney	kidney
21	chr5:94220800-94229200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr5:94220800-94230000	Weak transcription	Fetal Brain Female	brain
23	chr5:94221000-94221600	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr5:94221000-94224600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr5:94221000-94229200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
26	chr5:94221200-94222400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr5:94221200-94222600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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