Variant report

Variant	rs40590
Chromosome Location	chr5:94222408-94222409
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs159029	0.81[ASN][1000 genomes]
rs159030	0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs159032	0.81[JPT][hapmap]
rs293055	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs293056	0.81[JPT][hapmap]
rs293058	0.81[JPT][hapmap]
rs39988	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs469067	0.97[LWK][hapmap];0.83[MKK][hapmap];0.91[YRI][hapmap];0.81[AFR][1000 genomes]
rs469844	0.91[LWK][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs40590	CXCR4	trans	lymphoblastoid	seeQTL

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94165000-94240800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr5:94191000-94232200	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr5:94200800-94236600	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr5:94204400-94240600	Weak transcription	Lung	lung
5	chr5:94206800-94230000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr5:94207000-94227000	Weak transcription	Primary hematopoietic stem cells	blood
7	chr5:94207200-94223600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr5:94207200-94230000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr5:94207200-94240400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr5:94209400-94223000	Weak transcription	HUVEC	blood vessel
11	chr5:94211400-94224200	Weak transcription	Primary T cells from cord blood	blood
12	chr5:94217800-94223800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr5:94218000-94231000	Strong transcription	Primary monocytes fromperipheralblood	blood
14	chr5:94219400-94223000	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr5:94220000-94224600	Strong transcription	Primary neutrophils fromperipheralblood	blood
16	chr5:94220200-94238200	Weak transcription	Psoas Muscle	Psoas
17	chr5:94220800-94229200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr5:94220800-94230000	Weak transcription	Fetal Brain Female	brain
19	chr5:94221000-94224600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr5:94221000-94229200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr5:94221200-94222600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr5:94221600-94226800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr5:94222400-94222600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr5:94222400-94227000	Weak transcription	HUES48 Cell Line	embryonic stem cell

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