Variant report

Variant	rs293058
Chromosome Location	chr5:94206390-94206391
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:94201284..94203096-chr5:94204647..94207071,2	K562	blood:
2	chr5:94205159..94207112-chr5:94208983..94211350,2	K562	blood:
3	chr5:94202239..94204234-chr5:94204961..94206790,2	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs159029	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs159030	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs159032	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs159352	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs176809	0.90[CHB][hapmap];0.81[JPT][hapmap]
rs293054	0.90[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs293056	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs40590	0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv823144	chr5:94172237-94212534	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv969235	chr5:94206105-94212142	Active TSS Weak transcription Strong transcription Flanking Active TSS Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94163800-94209800	Weak transcription	Dnd41	blood
2	chr5:94165000-94240800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr5:94181200-94209400	Weak transcription	GM12878-XiMat	blood
4	chr5:94183200-94206400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr5:94186400-94208000	Weak transcription	Fetal Thymus	thymus
6	chr5:94191000-94232200	Strong transcription	Monocytes-CD14+_RO01746	blood
7	chr5:94194000-94209200	Strong transcription	Primary monocytes fromperipheralblood	blood
8	chr5:94200600-94208200	Weak transcription	Hela-S3	cervix
9	chr5:94200800-94236600	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr5:94202600-94211000	Weak transcription	Primary T cells from cord blood	blood
11	chr5:94203200-94206800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr5:94203200-94208400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr5:94203400-94208000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr5:94204200-94206400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr5:94204200-94207600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr5:94204400-94240600	Weak transcription	Lung	lung
17	chr5:94204800-94208400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr5:94205400-94206600	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr5:94205600-94206600	Enhancers	iPS-15b Cell Line	embryonic stem cell
20	chr5:94205600-94207000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr5:94205600-94207000	Enhancers	HUES48 Cell Line	embryonic stem cell
22	chr5:94205600-94207000	Strong transcription	Primary hematopoietic stem cells	blood
23	chr5:94205600-94207200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr5:94205600-94208600	Strong transcription	Primary neutrophils fromperipheralblood	blood
25	chr5:94205800-94206800	Enhancers	HUES64 Cell Line	embryonic stem cell
26	chr5:94205800-94206800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr5:94206200-94206600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
28	chr5:94206200-94206800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr5:94206200-94206800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr5:94206200-94206800	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr5:94206200-94206800	Strong transcription	Adipose Nuclei	Adipose
32	chr5:94206200-94207000	Strong transcription	HUVEC	blood vessel
33	chr5:94206200-94207200	Enhancers	HUES6 Cell Line	embryonic stem cell

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