Variant report

Variant	rs17683604
Chromosome Location	chr3:60888974-60888975
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11130783	1.00[CHD][hapmap]
rs17064044	1.00[ASW][hapmap]
rs17064252	1.00[CHD][hapmap]
rs17630955	1.00[ASW][hapmap]
rs17632419	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17632681	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56259187	0.94[AMR][1000 genomes]
rs73095283	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73095287	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73097817	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73097874	0.94[AMR][1000 genomes]
rs9842471	1.00[CHD][hapmap]
rs9851572	1.00[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534038	chr3:60781917-60993082	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv2757872	chr3:60781943-61019003	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv2759152	chr3:60781943-61220809	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs17683604	LGALS14	trans	lymphoblastoid	seeQTL
rs17683604	CAV2	trans	lymphoblastoid	seeQTL

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:60884800-60892400	Weak transcription	Primary hematopoietic stem cells	blood
2	chr3:60885800-60902200	Weak transcription	Ovary	ovary

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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