Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs12489644	0.84[AFR][1000 genomes]
rs12491786	0.97[LWK][hapmap];0.92[MKK][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs12492901	0.87[AFR][1000 genomes]
rs17063933	0.95[EUR][1000 genomes]
rs17063959	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17064252	1.00[CHD][hapmap]
rs17683604	1.00[CHD][hapmap]
rs28550945	0.98[EUR][1000 genomes]
rs57164580	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57755919	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6765136	0.88[CEU][hapmap];1.00[EUR][1000 genomes]
rs6772782	0.98[EUR][1000 genomes]
rs6780451	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6786508	0.94[EUR][1000 genomes]
rs72876976	1.00[EUR][1000 genomes]
rs7624678	0.98[EUR][1000 genomes]
rs9821406	1.00[CEU][hapmap]
rs9825246	1.00[EUR][1000 genomes]
rs9842471	1.00[CHD][hapmap]
rs9842547	1.00[EUR][1000 genomes]
rs9842721	1.00[EUR][1000 genomes]
rs9851572	1.00[CHD][hapmap]
rs9857754	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9879770	1.00[EUR][1000 genomes]
rs9880233	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529602	chr3:60088353-60830769	Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv998815	chr3:60495872-60830769	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv999828	chr3:60537384-60785274	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:60758800-60761800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr3:60758800-60761800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr3:60759400-60762800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr3:60759800-60761400	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
5	chr3:60760400-60761600	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
6	chr3:60760400-60761800	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
7	chr3:60760400-60762600	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
8	chr3:60760600-60761400	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
9	chr3:60760600-60762000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
10	chr3:60761000-60761200	ZNF genes & repeats	Pancreas	Pancrea
11	chr3:60761000-60761800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr3:60761000-60761800	ZNF genes & repeats	Placenta	Placenta

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