Variant report

Variant	rs12491786
Chromosome Location	chr3:60762575-60762576
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1014856	0.92[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs11130783	0.97[LWK][hapmap];0.92[MKK][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes]
rs12489644	0.85[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs12492010	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs12492901	0.92[CHB][hapmap];0.86[JPT][hapmap];0.90[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs1447927	0.84[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap]
rs17063990	0.92[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs17680697	0.92[CHB][hapmap];0.90[CHD][hapmap];0.86[JPT][hapmap];0.98[ASN][1000 genomes]
rs4974228	0.86[CHD][hapmap]
rs4974241	0.90[CHD][hapmap]
rs56129149	0.92[ASN][1000 genomes]
rs56228932	0.92[ASN][1000 genomes]
rs57164580	0.97[AFR][1000 genomes]
rs57755919	0.91[AFR][1000 genomes]
rs6780451	0.97[AFR][1000 genomes]
rs6791644	0.92[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs6794160	0.95[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529602	chr3:60088353-60830769	Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv998815	chr3:60495872-60830769	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv999828	chr3:60537384-60785274	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:60759400-60762800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr3:60760400-60762600	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
3	chr3:60761800-60765400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr3:60761800-60766200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr3:60762000-60765600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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