Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:60766983..60769190-chr3:60776208..60778636,2	K562	blood:

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1014856	0.80[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.93[ASN][1000 genomes]
rs11130783	0.87[AFR][1000 genomes]
rs12489644	0.94[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs12491786	0.92[CHB][hapmap];0.86[JPT][hapmap];0.90[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs12492010	0.80[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap]
rs1447927	1.00[CEU][hapmap];0.92[CHB][hapmap];0.86[JPT][hapmap];0.83[EUR][1000 genomes]
rs17063990	0.80[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.93[ASN][1000 genomes]
rs17680697	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35746862	0.83[EUR][1000 genomes]
rs4974228	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4974229	0.81[ASN][1000 genomes]
rs4974241	0.85[CHB][hapmap]
rs56129149	0.93[ASN][1000 genomes]
rs56228932	0.93[ASN][1000 genomes]
rs57164580	0.87[AFR][1000 genomes]
rs57755919	0.82[AFR][1000 genomes]
rs6780451	0.87[AFR][1000 genomes]
rs6791644	1.00[CHB][hapmap];0.86[JPT][hapmap];0.93[ASN][1000 genomes]
rs6794160	0.85[CHB][hapmap]
rs73836148	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529602	chr3:60088353-60830769	Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv998815	chr3:60495872-60830769	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv999828	chr3:60537384-60785274	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:60766800-60770600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:60767000-60782800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

Quick Search: