Variant report

Variant	rs9851572
Chromosome Location	chr3:60742337-60742338
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11130783	1.00[CHD][hapmap]
rs17064187	1.00[TSI][hapmap]
rs17064252	1.00[CEU][hapmap];1.00[CHD][hapmap]
rs17683604	1.00[CHD][hapmap]
rs57314888	1.00[EUR][1000 genomes]
rs57445613	1.00[EUR][1000 genomes]
rs58743358	1.00[EUR][1000 genomes]
rs6770159	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72886241	1.00[EUR][1000 genomes]
rs72886256	1.00[EUR][1000 genomes]
rs72886257	1.00[EUR][1000 genomes]
rs72886265	1.00[EUR][1000 genomes]
rs72889103	1.00[EUR][1000 genomes]
rs72889112	1.00[EUR][1000 genomes]
rs72889113	1.00[EUR][1000 genomes]
rs72889126	1.00[EUR][1000 genomes]
rs72889137	1.00[EUR][1000 genomes]
rs72889156	1.00[EUR][1000 genomes]
rs72889167	1.00[EUR][1000 genomes]
rs73836114	1.00[EUR][1000 genomes]
rs741890	1.00[EUR][1000 genomes]
rs9842471	1.00[CHD][hapmap]
rs9851737	1.00[ASW][hapmap];0.83[LWK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9862122	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529602	chr3:60088353-60830769	Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv998815	chr3:60495872-60830769	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv999828	chr3:60537384-60785274	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9851572	CXCL14	trans	lymphoblastoid	seeQTL

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:60736800-60743200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:60738000-60743400	Enhancers	NHDF-Ad	bronchial
3	chr3:60739600-60746400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr3:60739800-60746800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr3:60740400-60744000	Enhancers	Fetal Heart	heart
6	chr3:60740600-60742400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr3:60740800-60743000	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr3:60740800-60743400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr3:60741000-60743200	Weak transcription	Primary monocytes fromperipheralblood	blood
10	chr3:60741200-60743400	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr3:60741400-60743800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr3:60741800-60742600	Enhancers	H9 Cell Line	embryonic stem cell
13	chr3:60741800-60743600	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr3:60741800-60746400	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr3:60742000-60743200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr3:60742000-60743400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr3:60742200-60742400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr3:60742200-60742400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr3:60742200-60742600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr3:60742200-60742600	Enhancers	Muscle Satellite Cultured Cells	--
21	chr3:60742200-60742800	Enhancers	NH-A	brain
22	chr3:60742200-60743800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr3:60742200-60748000	Enhancers	Primary neutrophils fromperipheralblood	blood

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