Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs57314888	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57445613	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58532638	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58743358	1.00[EUR][1000 genomes]
rs6770159	1.00[EUR][1000 genomes]
rs72873058	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72873065	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72886241	1.00[EUR][1000 genomes]
rs72886256	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72886265	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72889103	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72889112	1.00[EUR][1000 genomes]
rs72889113	1.00[EUR][1000 genomes]
rs72889126	1.00[EUR][1000 genomes]
rs72889137	1.00[EUR][1000 genomes]
rs72889156	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72889167	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73836114	1.00[EUR][1000 genomes]
rs741890	1.00[EUR][1000 genomes]
rs9851572	1.00[EUR][1000 genomes]
rs9851737	1.00[EUR][1000 genomes]
rs9862122	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529602	chr3:60088353-60830769	Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv998815	chr3:60495872-60830769	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv534038	chr3:60781917-60993082	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv2757872	chr3:60781943-61019003	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv2759152	chr3:60781943-61220809	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:60825400-60828800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:60825800-60827600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr3:60826400-60828000	Enhancers	Liver	Liver
4	chr3:60826600-60827800	Enhancers	HepG2	liver
5	chr3:60827000-60827800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr3:60827000-60828000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr3:60827200-60828000	Enhancers	Pancreas	Pancrea

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