Variant report
| Variant | rs57445613 |
|---|---|
| Chromosome Location | chr3:60812447-60812448 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs57314888 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs58532638 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs58743358 | 1.00[EUR][1000 genomes] |
| rs6770159 | 1.00[EUR][1000 genomes] |
| rs72873058 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72873065 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72886241 | 1.00[EUR][1000 genomes] |
| rs72886256 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72886257 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72886265 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72889103 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72889112 | 1.00[EUR][1000 genomes] |
| rs72889113 | 1.00[EUR][1000 genomes] |
| rs72889126 | 1.00[EUR][1000 genomes] |
| rs72889137 | 1.00[EUR][1000 genomes] |
| rs72889156 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72889167 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73836114 | 1.00[EUR][1000 genomes] |
| rs741890 | 1.00[EUR][1000 genomes] |
| rs9851572 | 1.00[EUR][1000 genomes] |
| rs9851737 | 1.00[EUR][1000 genomes] |
| rs9862122 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv529602 | chr3:60088353-60830769 | Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 2 | nsv998815 | chr3:60495872-60830769 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 3 | nsv534038 | chr3:60781917-60993082 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 4 | esv2757872 | chr3:60781943-61019003 | ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 5 | esv2759152 | chr3:60781943-61220809 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:60811000-60815200 | Weak transcription | H9 Cell Line | embryonic stem cell |
| 2 | chr3:60811400-60821200 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
