Variant report

Variant	rs58532638
Chromosome Location	chr3:60965338-60965339
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs57314888	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57445613	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58743358	1.00[EUR][1000 genomes]
rs72873058	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72873065	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72875915	1.00[AMR][1000 genomes]
rs72875931	1.00[AMR][1000 genomes]
rs72886241	1.00[EUR][1000 genomes]
rs72886256	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72886257	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72886265	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72889103	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72889112	1.00[EUR][1000 genomes]
rs72889113	1.00[EUR][1000 genomes]
rs72889126	1.00[EUR][1000 genomes]
rs72889137	1.00[EUR][1000 genomes]
rs72889156	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72889167	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs741890	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534038	chr3:60781917-60993082	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv2757872	chr3:60781943-61019003	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv2759152	chr3:60781943-61220809	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv2752012	chr3:60952040-61016039	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv590409	chr3:60952040-61040860	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv876864	chr3:60952040-61103609	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv915904	chr3:60952040-61125194	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv1012510	chr3:60952040-61131709	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv536578	chr3:60952040-61131709	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:60964200-60967000	Enhancers	Primary neutrophils fromperipheralblood	blood
2	chr3:60964200-60979400	Weak transcription	Psoas Muscle	Psoas
3	chr3:60964400-60967000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr3:60964600-60966800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr3:60964600-60966800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr3:60964800-60966400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr3:60964800-60966800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr3:60964800-60967000	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr3:60964800-60967000	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr3:60965000-60966400	Enhancers	NHDF-Ad	bronchial
11	chr3:60965000-60966800	Enhancers	Placenta Amnion	Placenta Amnion
12	chr3:60965000-60967000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr3:60965200-60965600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr3:60965200-60965600	Enhancers	Placenta	Placenta
15	chr3:60965200-60965600	Enhancers	Ovary	ovary
16	chr3:60965200-60965600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
17	chr3:60965200-60966200	Enhancers	Osteobl	bone
18	chr3:60965200-60966400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr3:60965200-60966800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr3:60965200-60967000	Enhancers	Primary hematopoietic stem cells	blood

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