Variant report

Variant	rs72886241
Chromosome Location	chr3:60815024-60815025
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs57314888	1.00[EUR][1000 genomes]
rs57445613	1.00[EUR][1000 genomes]
rs58532638	1.00[EUR][1000 genomes]
rs58743358	1.00[EUR][1000 genomes]
rs6770159	1.00[EUR][1000 genomes]
rs72873058	1.00[EUR][1000 genomes]
rs72873065	1.00[EUR][1000 genomes]
rs72886256	1.00[EUR][1000 genomes]
rs72886257	1.00[EUR][1000 genomes]
rs72886265	1.00[EUR][1000 genomes]
rs72889103	1.00[EUR][1000 genomes]
rs72889112	1.00[EUR][1000 genomes]
rs72889113	1.00[EUR][1000 genomes]
rs72889126	1.00[EUR][1000 genomes]
rs72889137	1.00[EUR][1000 genomes]
rs72889156	1.00[EUR][1000 genomes]
rs72889167	1.00[EUR][1000 genomes]
rs73836114	1.00[EUR][1000 genomes]
rs741890	1.00[EUR][1000 genomes]
rs9851572	1.00[EUR][1000 genomes]
rs9851737	1.00[EUR][1000 genomes]
rs9862122	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529602	chr3:60088353-60830769	Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv998815	chr3:60495872-60830769	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv534038	chr3:60781917-60993082	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv2757872	chr3:60781943-61019003	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv2759152	chr3:60781943-61220809	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:60811000-60815200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr3:60811400-60821200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links