Variant report

Variant	rs6770159
Chromosome Location	chr3:60740471-60740472
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs57314888	1.00[EUR][1000 genomes]
rs57445613	1.00[EUR][1000 genomes]
rs58743358	1.00[EUR][1000 genomes]
rs72886241	1.00[EUR][1000 genomes]
rs72886256	1.00[EUR][1000 genomes]
rs72886257	1.00[EUR][1000 genomes]
rs72886265	1.00[EUR][1000 genomes]
rs72889103	1.00[EUR][1000 genomes]
rs72889112	1.00[EUR][1000 genomes]
rs72889113	1.00[EUR][1000 genomes]
rs72889126	1.00[EUR][1000 genomes]
rs72889137	1.00[EUR][1000 genomes]
rs72889156	1.00[EUR][1000 genomes]
rs72889167	1.00[EUR][1000 genomes]
rs73836114	1.00[EUR][1000 genomes]
rs741890	1.00[EUR][1000 genomes]
rs9851572	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9851737	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9862122	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529602	chr3:60088353-60830769	Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv998815	chr3:60495872-60830769	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv999828	chr3:60537384-60785274	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:60736800-60743200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:60737000-60741200	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr3:60737000-60741200	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr3:60738000-60743400	Enhancers	NHDF-Ad	bronchial
5	chr3:60739600-60741600	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr3:60739600-60742000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr3:60739600-60746400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr3:60739800-60740800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr3:60739800-60741200	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr3:60739800-60746800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr3:60740200-60740600	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr3:60740200-60741000	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr3:60740400-60740800	Enhancers	Muscle Satellite Cultured Cells	--
14	chr3:60740400-60740800	Enhancers	Monocytes-CD14+_RO01746	blood
15	chr3:60740400-60744000	Enhancers	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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