Variant report

Variant	rs17063933
Chromosome Location	chr3:60748255-60748256
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11130783	0.95[EUR][1000 genomes]
rs17063959	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs28550945	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs57164580	0.95[EUR][1000 genomes]
rs57755919	0.95[EUR][1000 genomes]
rs6765136	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6772782	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6780451	0.95[EUR][1000 genomes]
rs6786508	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72876976	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7624678	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9825246	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9842547	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9842721	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9857754	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9879770	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9880233	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529602	chr3:60088353-60830769	Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv998815	chr3:60495872-60830769	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv999828	chr3:60537384-60785274	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:60743800-60751600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr3:60746200-60756200	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr3:60747200-60756000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr3:60747200-60756400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr3:60747600-60748400	Enhancers	Fetal Brain Male	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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