Variant report

Variant	rs17063959
Chromosome Location	chr3:60759780-60759781
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11130783	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17063933	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs28550945	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs57164580	1.00[EUR][1000 genomes]
rs57755919	1.00[EUR][1000 genomes]
rs6765136	0.89[CEU][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6772782	0.99[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6780451	1.00[EUR][1000 genomes]
rs6786508	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72876976	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7624678	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9821406	1.00[CEU][hapmap]
rs9825246	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9842547	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9842721	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9857754	1.00[CEU][hapmap];0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9879770	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9880233	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529602	chr3:60088353-60830769	Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv998815	chr3:60495872-60830769	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv999828	chr3:60537384-60785274	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:60758800-60760400	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr3:60758800-60761000	Weak transcription	Placenta	Placenta
3	chr3:60758800-60761800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr3:60758800-60761800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr3:60759000-60760200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr3:60759400-60762800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr3:60759600-60759800	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr3:60759600-60760400	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr3:60759600-60760400	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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