Variant report

Variant	rs1768892
Chromosome Location	chr9:9751606-9751607
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:9751206..9753342-chr9:9765211..9766880,2	MCF-7	breast:

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10122890	0.85[YRI][hapmap]
rs10125050	0.85[YRI][hapmap]
rs10977934	0.85[YRI][hapmap]
rs10977944	0.85[YRI][hapmap]
rs10977947	0.81[CHD][hapmap]
rs12353171	0.85[CEU][hapmap];0.85[YRI][hapmap]
rs1323797	1.00[CEU][hapmap];0.85[YRI][hapmap];0.93[EUR][1000 genomes]
rs1323801	0.81[CEU][hapmap];0.85[YRI][hapmap]
rs1359174	1.00[CEU][hapmap];0.85[YRI][hapmap]
rs1408122	0.81[CHD][hapmap]
rs1408125	0.81[CEU][hapmap];0.80[LWK][hapmap];0.85[YRI][hapmap]
rs1626530	0.82[YRI][hapmap]
rs1629307	0.89[ASW][hapmap];0.85[CEU][hapmap];0.87[CHB][hapmap];0.91[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];0.95[LWK][hapmap];0.91[MEX][hapmap];0.85[MKK][hapmap];0.85[TSI][hapmap];0.85[YRI][hapmap]
rs1746790	1.00[CEU][hapmap];0.85[YRI][hapmap];0.93[EUR][1000 genomes]
rs1746791	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[EUR][1000 genomes]
rs1746792	1.00[YRI][hapmap];0.93[EUR][1000 genomes]
rs1746803	0.85[CEU][hapmap];0.85[YRI][hapmap]
rs1746806	0.85[CEU][hapmap];0.85[YRI][hapmap]
rs1746809	0.85[CEU][hapmap];0.85[YRI][hapmap]
rs1746810	0.89[ASW][hapmap];0.81[CEU][hapmap];0.86[GIH][hapmap];0.95[LWK][hapmap];0.81[MKK][hapmap];0.83[TSI][hapmap]
rs1768877	0.96[CEU][hapmap];0.85[YRI][hapmap];0.92[EUR][1000 genomes]
rs1768884	0.85[CEU][hapmap];0.85[YRI][hapmap]
rs1768885	1.00[ASW][hapmap];0.96[CEU][hapmap];0.87[CHB][hapmap];0.91[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.95[LWK][hapmap];0.91[MEX][hapmap];0.83[MKK][hapmap];0.87[TSI][hapmap];0.85[YRI][hapmap]
rs1768891	0.96[CEU][hapmap];1.00[YRI][hapmap];0.92[EUR][1000 genomes]
rs1768893	0.92[CEU][hapmap];0.85[YRI][hapmap];0.92[EUR][1000 genomes]
rs1934267	0.96[CEU][hapmap];0.85[YRI][hapmap];0.91[EUR][1000 genomes]
rs2025392	0.85[YRI][hapmap]
rs2025394	0.85[CEU][hapmap];0.81[TSI][hapmap]
rs2225979	0.82[YRI][hapmap]
rs2263141	0.85[CEU][hapmap];0.85[YRI][hapmap]
rs2476584	0.94[EUR][1000 genomes]
rs2761695	0.85[CEU][hapmap];0.85[YRI][hapmap]
rs2761696	0.85[CEU][hapmap];0.85[YRI][hapmap]
rs2761700	1.00[CEU][hapmap];1.00[YRI][hapmap];0.88[EUR][1000 genomes]
rs2761702	1.00[CEU][hapmap];0.85[YRI][hapmap];0.89[EUR][1000 genomes]
rs2761703	1.00[CEU][hapmap];0.82[YRI][hapmap];0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2761704	1.00[CEU][hapmap];0.85[YRI][hapmap];0.89[EUR][1000 genomes]
rs2761705	1.00[CEU][hapmap];0.85[YRI][hapmap];0.91[EUR][1000 genomes]
rs2761706	1.00[CEU][hapmap];0.82[YRI][hapmap];0.91[EUR][1000 genomes]
rs2761707	1.00[CEU][hapmap];0.85[YRI][hapmap];0.93[EUR][1000 genomes]
rs2761708	0.94[EUR][1000 genomes]
rs2821461	0.85[YRI][hapmap]
rs2821462	0.85[CEU][hapmap];0.85[YRI][hapmap]
rs2821463	0.84[CEU][hapmap];0.85[YRI][hapmap]
rs2821465	0.85[CEU][hapmap];0.85[YRI][hapmap]
rs2821466	0.96[CEU][hapmap];0.85[YRI][hapmap]
rs2821468	0.85[CEU][hapmap];0.85[YRI][hapmap]
rs3118010	1.00[CEU][hapmap];0.85[YRI][hapmap];0.92[EUR][1000 genomes]
rs3118011	1.00[CEU][hapmap];0.85[YRI][hapmap];0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6477405	0.83[TSI][hapmap]
rs6477414	0.85[YRI][hapmap]
rs7036733	0.84[CEU][hapmap]
rs7852298	0.85[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033808	chr9:9431799-9777960	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv892264	chr9:9440838-9796577	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv892265	chr9:9476425-9796116	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv892270	chr9:9591059-9860735	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv613319	chr9:9630855-9778653	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1028772	chr9:9631694-9779358	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv2422381	chr9:9647540-9887820	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv1020468	chr9:9658670-9780975	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv539983	chr9:9658670-9780975	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv892274	chr9:9687742-9787587	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv526471	chr9:9718066-9832245	Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
12	nsv613321	chr9:9724976-9758609	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	nsv1034236	chr9:9728895-9779358	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
14	esv2829906	chr9:9737201-9897866	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:9748600-9752600	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr9:9751600-9751800	Flanking Active TSS	Liver	Liver

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